Detailed information on CNT30577653


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281672Oryza barthiiChenopodium quinoa39.6101.2790240forward
CNT30223508Oryza barthiiHordeum vulgare29.0429.4398.3176forward
CNT30234846Oryza barthiiBrassica oleracea8.4221.2592.1651reverse complement
CNT30553994Oryza barthiiOryza glaberrima80.5368.6498.98488reverse complement
CNT30627892Oryza barthiiDaucus carota63.0462.7394.5382reverse complement
CNT30153321Oryza barthiiPrunus persica38.1247.6392.64231forward
CNT3025558Oryza barthiiPopulus trichocarpa80.6960.3789.16489reverse complement
CNT30150988Oryza barthiiBrachypodium distachyon80.5327.9597.13488reverse complement

Expression of CNT30577653

Peptides detected in this lncRNA

>peptide 1 (30 aa)
VLGFAKLHRYAEEKCYPHSDQDKTFTKSLL*

>peptide 2 (48 aa)
MIISWLLGTNQIRWFYFSTFLICSYGTKVERXEKVSHSQPLMKDFSKS*

>peptide 3 (50 aa)
FWVLQNSIDMQKRNAIPTPTKTKLLPKVYCNLFVQITIKVKQGQEQRISL*

Sequence

>CNT30577653
GTTTTGGGTTTTGCAAAACTCCATAGATATGCAGAAGAGAAATGCTATCCCCACTCCGACCAAGACAAAACTTTTACCAAAAGTTTATTGTAATCTTTTT
GTTCAAATAACAATTAAGGTGAAGCAGGGTCAGGAACAACGAATCTCTTTATGATAAACAGATCCATTTTGCAAGCTCGTTATTACGGGTAGTTCCTACA
AAGAATCGGACTAATGACGTATACAATGCTTGAATTATCGACGTAGATGCTACATAGTGGGTTCTCATCCTTCAGAGACTACGAGTGTAATAGGAGCATC
CGTTGACAAAAGGATCACCCTAAGATGATCATCTCATGGCTATTGGGAACGAATCAAATCAGATGGTTCTATTTCTCAACCTTTCTGATTTGCTCCTACG
GAACCAAGGTCGAAAGGANTGAAAAAGTCAGTCATTCACAACCACTGATGAAGGATTTCTCGAAAAGTTAAGGATTAGTAGTTCTTTTTCCTGTCCGGCA
TTTATGATTTTCTCGCCTACGTTCTTGTCGCCGTGATGTGCACGTGCCACCGATGAAGGCGTCGAGGTCAGGAGAGGGAGAGGAATCGACGGAGAGAGAG
AGAGGC