CANTATAdb - search

Detailed information on CNT30577620

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30370984	Oryza barthii	Oryza glumipatula	100	66.25	98.29	526	forward
CNT30117513	Oryza barthii	Oryza nivara	100	43.33	98.48	526	forward

Expression of CNT30577620

Peptides detected in this lncRNA

>peptide 1 (62 aa)
IYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIRITPRIST*

Sequence

>CNT30577620
CAATCTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATG
GTTATATTTTGGGATCGAGGGAGTATTTGTTTCTGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGT
TGGGAAACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCATCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACC
CATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTGCCCCACTTCACTTGCCGGGG
ACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCGGCCNTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGT
CGTCGGCGAGGCCGAGCGGGTCGAAG