Detailed information on CNT30577609


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000279, E-value = 1e-138

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109228Oryza barthiiOryza longistaminata77.3336.696.16781forward
CNT30115512Oryza barthiiOryza nivara54.9516.0598.92555forward

Expression of CNT30577609

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MRDEINEFLVSRSNLVVASIKIIWKEIMWEVFENQYHPVPYYLTNGSKQPNIYTTDTCCYIFFKKQIMWN*

>peptide 2 (38 aa)
MDQSNQTYTRQTLAATYFLKNKLCGINFLELSLMFLGK*

>peptide 3 (32 aa)
LSSHDLFFSRTICMLYPRFQLLKFFCHADRHT*

>peptide 4 (29 aa)
MTDAKLSRSKTTVNLCADSSNYFVFYLIC*

>peptide 5 (35 aa)
MRKTRDKKQMLEHEKKRDFGEDHLQNVQQPTPRKV*

>peptide 6 (35 aa)
MRRKEILEKIIYKMYNNPLQERSRKKLKYSRCSIR*

Sequence

>CNT30577609
ATTATCATCACATGATCTTTTTTTTTCCAGAACTATTTGTATGCTTTATCCAAGGTTCCAACTTCTGAAGTTTTTTTGTCATGCTGATAGACACACCTAG
CTGAACATGTAGCATTATGAGGTCAAATGACCGATGCTAAACTAAGTAGGAGTAAGACAACAGTTAATTTATGTGCTGACAGTAGTAATTATTTTGTTTT
TTATTTAATTTGTTGATTTTTTTTCTTTTCCCAACTGTATATAAATTTAGGATACACGGAACGAAGAACTTGGCACATAAAGGGACGATGGGCACCTATG
GTGGAGGTGGAACAAGCAAAACAATAGGGAATGAGGAACCGCGATCATGAGGAAAACCAGGGACAAGAAGCAAATGCTAGAACATGAGAAGAAAAGAGAT
TTTGGAGAAGATCATCTACAAAATGTACAACAACCCACTCCAAGAAAGGTCTAGAAAGAAGCTGAAATATTCAAGGTGCTCGATTCGATGAGGGATGAGA
TCAATGAATTTCTAGTATCGAGAAGTAATCTGGTAGTTGCATCCATCAAGATTATATGGAAAGAGATTATGTGGGAAGTCTTTGAGAATCAGTATCATCC
AGTGCCCTATTATCTTACTAATGGATCAAAGCAACCAAACATATACACGACAGACACTTGCTGCTACATATTTTTTAAAAAACAAATTATGTGGAATTAA
CTTTCTGGAACTAAGTTTAATGTTTTTGGGGAAGTGACTTTCATGTTGAAGGAAGTAACTTTCTTGCTTGTAGAAAGTAACTTTTACTTCTAGAGAATGT
GTATGCAGCTGATGCAACTTTTTGTTAAAGAGTCCATCAAAATGCATACCACATCAGTATGCTACTAGATATATATTTTATGTTTTTGTCAACCTAAGAA
ATAAACTGCATAGAAGTACGCAAAATCTAAATCGAGAGGCATCTCGTTTTAGTGCTAACGAGCGACGCCAGATGTCCGAATATGTGTTAATCTATAGTAC
TTGTCTATCA