Detailed information on CNT30577602


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007369, E-value = 1e-135

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695901Oryza barthiiOryza sativa62.2973.0396.26669forward
CNT30554931Oryza barthiiOryza glaberrima63.0474.0795.86677forward
CNT30103500Oryza barthiiOryza rufipogon77.0978.9396.62828forward
CNT30117574Oryza barthiiOryza nivara61.7373.7595.93663forward

Expression of CNT30577602

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MESVFSVGCKYASVILSAGDVYLVGQISC*

>peptide 2 (37 aa)
MFELFVAVCGQWNPCFLLDANMLVSYYLPVMYTLWGR*

>peptide 3 (94 aa)
RRHPRVLPLRRRCIRRLAATDLNRVISLSYPEIVQPSHPNPNLVPADQRAVPPRLAHFHHQSSRRPSLSPRRPSPLESMPPQVRRHTPRHPDQR*

>peptide 4 (39 aa)
SPPPSSAAAPPSLHPSSRRHRSQSRDFPFLSRNRATLSP*

>peptide 5 (37 aa)
MSTSFASLDLCTSSAGCQHEKFMILTYVCEYVCNNEF*

Sequence

>CNT30577602
GTCGCCGCCACCCTCGAGTGCTGCCGCTCCGCCGTCGTTGCATCCGTCGTCTCGCCGCCACCGATCTCAATCGCGTGATTTCCCTTTCTTATCCCGAAAT
CGTGCAACCCTCTCACCCTAACCCTAATCTTGTCCCCGCCGACCAACGCGCCGTGCCGCCCCGCCTCGCCCACTTCCACCATCAATCGTCGCGCCGCCCC
TCCCTCTCTCCTCGCCGCCCCTCCCCGCTCGAGTCCATGCCGCCGCAAGTTCGCCGTCACACGCCGCGTCACCCGGATCAGCGTTGACGTCGCACGCCTT
CCTCCTCACATCGCCCAGATCGGCACTCGCCCTCACTGCATACGCTCGTCCTCGGTCATATCGGCGCCACCGCTGTCGCCGTCACACGCAGTCCTCCCCG
TCCACCTCGCCGGCCTCACGCCCTCGCCGCTCCCAACCTCGCCCACGAGATCCTACTTTGATATGGTTGAGACTTCATAAATTAGTACACTTCCTCGATG
ACCCTTCAATGAATGCCTAAATACTAGAGCTGCCAGAATGGAAAATGCCTGAACATTGCTCTGAAGATGAGTACATCTTTTGCAAGTCTTGATCTGTGCA
CCTCTTCAGCTGGTTGTCAGCATGAAAAATTTATGATTCTGACATATGTCTGTGAATATGTTTGTAACAATGAATTCTAAAAACATATATCTCTGAATAC
GTTTGTAAATTTAGTTGGATTTTGTGAAGTTTTCAGTGAGCTTTGGAATGATTATGAGATAGCTAAAGATGACTATTGCTTGTATGGACCAACATGGTCT
TGTATCATTGACTTGGTTGTAATATATTTGGAATGTGTTAATAACTGTGAACTGATGTATTGTATTCAAATAATTGAAGCCTTGAATTGGTCTCAACTTG
TAGATAGAAGAAATCGTATCAAAGATGTTTGAATTGTTTGTTGCTGTGTGTGGACAATGGAATCCGTGTTTTCTGTTGGATGCAAATATGCTAGTGTCAT
ACTATCTGCCGGTGATGTATACCTTGTGGGGCAGATAAGTTGCTGACCATCCAAATATCTGCCGGTAAAGCTAT