Detailed information on CNT30577568


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695704Oryza barthiiOryza sativa90.1917.899.76423forward
CNT30555812Oryza barthiiOryza glaberrima65.4638.5299.67307forward
CNT30150013Oryza barthiiBrachypodium distachyon24.5228.5486.96115forward
CNT30102962Oryza barthiiOryza rufipogon81.4527.5499.48382forward

Expression of CNT30577568

Peptides detected in this lncRNA

>peptide 1 (65 aa)
QIFSFPSSRNPRRLSLLAPAGWPVAGRRSRLPCPLRPAGSRHYRWWNAALTEGCGWRAARPQNGG*

>peptide 2 (49 aa)
RYSAFLPPVIPAVSLSSLRRVGRSPVAGAACPALSGRREAAIIAGGTRR*

Sequence

>CNT30577568
CAGATATTCAGCTTTCCTTCCTCCCGTAATCCCCGCCGTCTCTCTCTCCTCGCTCCGGCGGGTTGGCCGGTCGCCGGTCGCCGGAGCCGCCTGCCCTGCC
CTCTCCGGCCGGCGGGAAGCCGCCATTATCGCTGGTGGAACGCGGCGTTGACCGAGGGATGCGGGTGGAGGGCGGCCCGGCCGCAGAACGGGGGATGAAT
GCGGTAGGGGACGCCGACGGCGGCGGTGGCTAGGGTTGGGGAACTCACTGCTGCTCTCCTTCGATCGCGCCGCCGTTGCCCGTCGTCGAGTTGGGCGACG
ACCAGGGGCAGGGACAGGTTAAGGAGTTCATCTCCTGCGTGAAGTAAAGGGCTGCCTTGTCCAAACTTTGTTCCTAATTAGCTAAGCTCTATGTTGACTT
GTCCCTGATTGACAACTTGACAGGTACATATCTTTTCCTTTTTAAATAAGGGCGTAATGATATTTCCCC