CANTATAdb - search

Detailed information on CNT30577551

BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 2e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30393705	Oryza barthii	Triticum turgidum	48.48	45.71	92.79	416	forward
CNT30665496	Oryza barthii	Triticum dicoccoides	43.94	54.01	93.1	377	forward
CNT30596768	Oryza barthii	Oryza meridionalis	71.68	78.54	95.28	615	forward
CNT30148465	Oryza barthii	Brachypodium distachyon	48.6	53.74	88.73	417	forward
CNT30579413	Oryza barthii	Echinochloa crusgalli	47.9	44.29	90.75	411	forward

Expression of CNT30577551

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNTHQNSPNIYYNIIRRDYIPPSIDYTIINN*

>peptide 2 (35 aa)
MAMVVGGGERSVPCGGFDSSGVVWRRWSREKPKKKR

>peptide 3 (37 aa)
MSKTFLPVNLTSMGLTFLPMLRKFWPTPCLPALTFSG*

Sequence

>CNT30577551
AATTAATTCACAATAATTAACACGTTAATGAACACGCATCAAAATTCACCAAACATATACTACAATATTATAAGAAGAGATTATATCCCACCATCGATCG
ATTACACCATCATCAATAACTGAAGAGCAGCCTGACAGATGATTAAAATTACATGTCCATCCACCCAAAACACAAGTAATTAATAGGTCGATTATGAGAG
AAGAAGAAGAAGGAGAAGTCTAGATGTCGAAGACGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCC
GACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCATTGGGGAAGACGCGGTAGAACTGGTAG
TTGATCTTGTACTTGGAGCGGAGCCTGGTGCCCAGGGCCAGCTTCAGCAGGTTGGGGCCCTCGCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACA
CCTGCTCCTTGGGCGACGTCCATGTGATGACGTAGAACTCCTCCACCTGCGCCTTCCGGAGGAGTCCCCCCGTGCTCCCGCCGAAGATCGGGGACGGCGT
GTTGGGGTCCAGCTGCGGCGGCACGAACCCCGCGGGGGCTGGCTTCTTCTCCTCCGTCGCCGCCGCGGCGGGCTGATCCTCCGCCGCCGCTCTGAGGGAG
GTGGGTGCCCTCGAGGAGGTGGCACTTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGTGGTCGGAGGAGGAGAGAGGAGTGTACCGTGTGGTGGATTC
GATTCGAGTGGTGTGGTGTGGAGGAGATGGAGTAGAGAAAAGCCCAAGAAGAAGAGAG