Detailed information on CNT30577544


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696552Oryza barthiiOryza sativa40.848.9987.4127forward
CNT30555391Oryza barthiiOryza glaberrima40.8411.0388.19127forward
CNT30370942Oryza barthiiOryza glumipatula10077.94100311forward
CNT30118060Oryza barthiiOryza nivara40.8424.4787.4127forward

Expression of CNT30577544

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCGSLQFADQWLYMVDINLKITGSIWLIT*

>peptide 2 (44 aa)
CPSIYLSELIRRGRCRLAGSLHPANLHFFSSIQCFLHDQYLKSQ*

Sequence

>CNT30577544
ATGTCCCTCCATATATCTCAGTGAGTTGATTCGCCGAGGAAGATGCCGACTCGCCGGATCCCTTCATCCTGCCAATCTTCATTTTTTTTCCAGTATACAG
TGCTTCCTACATGATCAATATCTCAAATCTCAATGAAGATAGGTAGATTGTTATTCCAGGTTGGTTCTCTGGATGTGTGGAAGTTTGCAATTTGCAGATC
AATGGCTGTATATGGTTGATATAAATTTGAAGATCACTGGCTCTATATGGTTGATAACTTGATATGAGGGTAATTGGGAAATCTGTGATAATCACATCTC
AAGAAGCTATG