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Detailed information on CNT30577496


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 3e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Oryza barthiiOryza sativa46.2539.0294.74247forward
CNT30518005Oryza barthiiJuglans regia47.5750.982.68254forward
CNT30618877Oryza barthiiSesamum indicum21.1614.3688.5113forward
CNT3072234Oryza barthiiQuercus suber20.7917.6281.98111forward
CNT30179138Oryza barthiiSecale cereale37.8325.0394.55202forward
CNT30296237Oryza barthiiTriticum aestivum46.2551.2494.33247forward
CNT30220281Oryza barthiiHordeum vulgare33.3334.394.94178forward
CNT30395424Oryza barthiiTriticum turgidum37.6441.7994.53201forward
CNT30554669Oryza barthiiOryza glaberrima45.3242.61100242forward
CNT30172842Oryza barthiiTrifolium pratense21.1620.481.42113forward
CNT30434919Oryza barthiiAegilops tauschii46.0740.5391.46246forward
CNT30241394Oryza barthiiAvena sativa37.8338.4894.55202forward
CNT30657146Oryza barthiiTriticum dicoccoides46.0743.3993.9246forward
CNT30130711Oryza barthiiLolium perenne37.8329.7195.05202forward
CNT30722585Oryza barthiiTriticum spelta37.8327.5695.05202forward
CNT30619778Oryza barthiiCajanus cajan23.4118.8887.2125forward
CNT30596761Oryza barthiiOryza meridionalis99.2567.0996.6530forward
CNT30360078Oryza barthiiLactuca sativa29.7820.0882.39159forward
CNT3024772Oryza barthiiPopulus trichocarpa34.6431.279.46185forward
CNT30102870Oryza barthiiOryza rufipogon59.5577.5699.37318forward
CNT30176425Oryza barthiiVigna angularis21.7213.8483.62116forward

Expression of CNT30577496

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MDSLRRRRRENHQTPTTLERLRAGELGDGLGALGDGVLGGRRSGSPWR*

>peptide 2 (52 aa)
MVGFLLYLASLAASPASFSKMSLMNEFMIDMALEEIPMSGCTCLSTLKMYIL*

Sequence

>CNT30577496
GTCCAACTAAACAGCATCCACAATTCCACACAAAAATGACGCGAAGAATGATAGTAACAATTTAGCAACCAGAGGTTGCAACCATCACCATTAATTTTAA
GATCAGAACTCAACGGGCACAACCACGAGATTCTTACAGTAATCAGCAAGCACTAGACAGGAACACTAGACACAAGAGAAAGAAATCAGAGATCGACAGG
GCAACTACCACCGCTGCCATGGACTCGCTACGACGAAGACGAAGAGAAAATCACCAAACACCTACTACACTAGAGCGCCTAAGAGCTGGTGAACTTGGTG
ACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGGACGGAGGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTACCTGGCGAGCTTGGCG
GCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAACGAGTTCATGATTGACATGGCCTTGGAGGAGATCCCGATGTCCGGGTGCACCTGCTTGAGCA
CCTTGAAGATGTATATCTTGTAGGTCTCGACGCT