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Detailed information on CNT30577477


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109833Oryza barthiiOryza longistaminata35.359.3390.79304forward
CNT30116590Oryza barthiiOryza nivara20.4733.4690.91176forward

Expression of CNT30577477

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRYYDWVKLSWPFNWSIWERYVHCAVGLIVDS*

>peptide 2 (54 aa)
MWVLHIWKDIQILFSLIGFTMFFKYSLFLFVRHLHIPLPISLSSSCIRIQEQGW*

Sequence

>CNT30577477
GTAAATATTATCATTTAGTATGCCAAAGTTTATAGTCTTTTTCACAATATAAATACTTCTTCTTTTACAATTATAAGGTAATAAATTGTTCGTATAAGAC
TTTTCTTAATATTCTTTTTATAAACAATAAATAAATTGCCGCGCATCTGCGCGGGCTTCCTTTCTAGTTATTAGAAATAATGAGATATTATGATTGGGTG
AAACTGTCTTGGCCATTTAATTGGAGTATTTGGGAGAGGTATGTGCACTGTGCAGTCGGCCTGATCGTTGATTCGTAGTTATGTTCAGTCTTGGGCAGCT
TAATCTGGCTCCAAGTTGGCAGCAAGCATTCCCTGTTCTAAACTGCTCTCTTACTTAAGTTTGCTGAAGGGATACTCCTTACATTGAAGTTCATTAGCTA
CACTTCTTTGCTTGTTAGAAGTTGCTCTGTTGCTGTTCAATATGTCAGCAAAATAAATCTGAGAAATCACTCTGGTGCTTCAAGAGAGGAAAAACTTCAG
AGCGCTGTGCACCACGTGTGCAGTTTAGGACTTCCCATCATGCCATAGAACAAAACCATATATTGCTTAACTTTATTAGATTTAGTAGAGGTATAAAACC
ATGCTGTAGCACTTAACTGAACTGAGCATGTTTGACCGGATTGTGTGGCATGCGATGAGCTTGGTTGATCACCTTCAAAATTGATGCAATGTGGGTTCTT
CACATTTGGAAGGACATTCAAATCCTTTTTTCGCTTATAGGCTTCACGATGTTTTTTAAGTATTCCTTGTTTCTTTTCGTCAGGCATTTGCACATACCGC
TCCCTATCTCTTTGTCTTCTTCGTGCATTAGGATCCAAGAACAGGGATGGTGATCCAGAT