Detailed information on CNT30577476


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002948, E-value = 7e-137

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520302Oryza barthiiSetaria italica31.2975.687.61347forward
CNT30349956Oryza barthiiEragrostis tef18.6779.9291.79207forward
CNT30370968Oryza barthiiOryza glumipatula35.89100.2592.21398forward
CNT30100813Oryza barthiiOryza rufipogon32.82100.2895.6364reverse complement

Expression of CNT30577476

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVSEPSLAVSRARVSQLRRHGAHGWCRPGGWPRVDRRGRRSLLRG*

>peptide 2 (29 aa)
MKAARCKWARPGRVVTLLELNIATNQGLHF

>peptide 3 (33 aa)
MGDRPGNSSRVHTSEDKVCRKDMCWSVRAVYDL*

>peptide 4 (45 aa)
MVSEPSLAVSRARVSQLRRHGAHGWCRPGGWPRVDRRGRRSLLRG*

>peptide 5 (56 aa)
TSFPEADLQITPGLSVLGLEQFGMGDRPGNSSRVHTSEDKVCRKDICWSVRAVNDL*

>peptide 6 (44 aa)
MKAARCKWARPGRGGSLQNGIRAVSRGFTGACVAVAQAWCAWLV*

>peptide 7 (33 aa)
MGDRPGNSSRVHTSEDKVCRKDMCWSVRAVYDL*

Sequence

>CNT30577476
ACTTCTTTTCCGGAAGCCGATCTCCAAATAACTCCAGGGTTAAGCGTGCTTGGCCTAGAGCAATTTGGGATGGGTGACCGACCGGGAAATTCTTCCCGGG
TGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATATGTTGGTCTGTGAGGGCAGTCAATGACCTATGAAAGCTGCCAGATGTAAGTAAGTGGGCCCG
GCCTGGGAGAGGCGGGTCGTTACAAAATGGTATCAGAGCCGTCTCTCGCGGTTTCACGGGCGCGTGTGTCGCAGTTGCGCAGGCATGGTGCGCATGGCTG
GTGTAGACCAGGTGGCTGGCCTAGGGTTGATCGACGGGGGCGTCGATCTCTCTTAAGGGGGTGAGCGTGTAACATCCCGGCCTAGGGCTTAATAGGATTA
ATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGCCGATCTCCAAAGAACTCCAGGGTTAAGCGTGCTTGGCCTAGAGCAATTTGGGATGG
GTGACCGACCGGGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGCAGTCTATGACCTATGAAA
GCTGCCAGATGTAAGTGGGCCCGGCCTGGGAGAGGCGGGTCGTTACAAAATGGTATCAGAGCCGTCTCTCGCGGTTTCACGGGCGCGTGTGTCGCAGTTG
CGCAGGCATGGTGCGCATGGCTGGTGTAGACCAGGTGGCTGGCCTAGGGTTGATCGACGGGGGCGTCGATCTCTCTTAAGGGGGTGAGCGTGTAACATCC
CGGCCTAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGCCGATCTCCAAATAACTCCAGGGTTAAGCGTGCT
TGGCCTAGAGCAATTTGGGATGGGTGACCGACCGGGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTG
AGGGCAGTCTATGACCTATGAAAGCTGCCAGATGTAAGTGGGCCCGGCCTGGGCGGGTCGTTACACTTTTAGAGCTAAACATAGCTACAAATCAGGGTTT
ACACTTTCG