Detailed information on CNT30577454


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595508Oryza barthiiOryza meridionalis15.5868.395.58362reverse complement
CNT30110813Oryza barthiiOryza longistaminata35.2198.4494.87818reverse complement
CNT30115921Oryza barthiiOryza nivara93.2895.4295.062167forward

Expression of CNT30577454

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MEGRRRVRGEGLALLSPGTSWERRQRGREERWG*

>peptide 2 (31 aa)
MHKRKVPERIITLKWILKLPPYKKLNYVAFR*

>peptide 3 (53 aa)
MQYVAIKELKSPPRSMVSCPCIKIHMAGRGSMPVMARWICSPNPVVSFKVVQQ*

>peptide 4 (38 aa)
MTTIDRVLSTISKGCNFVWLFREPQVPDSVQCCHHSSS*

>peptide 5 (35 aa)
MISMQQQIKTLFFYLLAQCIVLLSDIFGWICYIFS*

>peptide 6 (87 aa)
MHSPAVRYIWMDMLYIFMNYKSHSPANNNLITSNCLFSFSCSYNEEKNYWLPKVKLSKYSDSLSKPANELLRTRKMKYLFHISSNQH*

>peptide 7 (56 aa)
MWRPRRRGGAVRRTRIPSACHHRAPPPIQQPGGGDGGGPDLSRSRSRSPVAMLSQA*

>peptide 8 (62 aa)
MGEAATRTRGEVGVGGEAATKRRRWRLRACDDERMRSGGGGEARGERAECELFSFFFISSLLL

>peptide 9 (43 aa)
MRRRWRVAGACEERASPCSHRGRHGRGGNEDERRGGGRGRGGH*

Sequence

>CNT30577454
CTGGAGTGGCATATATCAATATGATATTTTATAAAGGCAAATATTGTAAGTAGCAAATTTTTTTTGTCGAGAACATTTCAATGTCATATATCTAACTAGG
ATATTACTAGAAAACACGCGTGGCTTTTTTACGCGCGAGTGAATATATAACATGAAAAATGGGTTTCCATTGAACATTGAGTCCAATACTCAATATTCAC
GGTAGTAAACATCATATTACAAATAATCTGAATATATGCATAAAAGAAAGGTACCAGAGAGAATTATCACACTGAAATGGATTCTAAAACTCCCTCCATA
CAAAAAACTGAATTATGTAGCCTTTAGATAGATTCATACATTGCTAAAGACCAGTTTAACTAATGTCGTTATATTATCATTTTGAAGCTTGAGAAACATA
TCTCAGATTCATCCCAATAGTTGATAATATGAATGCAAGCCTCCTCCGGTCCTCCTGCTATCACCCTGGATCATTACAAATGCGCACGGAAATGTGTTAA
CAGTTCTCTGAACTAATAGCGAAATAAACAGGTGTTCTGTAAACAAATAAAAGCAGAAAATATACATATATACCATCTACATGATAGTGCTTCCTAGCTC
ATCTCTGAAGATATTTGCAAGTGCAACCAGTTAGTATTAAGATAATACAAGATTGCTGCTACCCTGCCATGACAAGCCATGACAACCATTGACAGAGTAC
TTTCGACGATCAGCAAAGGCTGCAATTTTGTCTGGCTATTCAGAGAACCCCAAGTTCCCGACTCAGTGCAGTGCTGTCATCATTCATCAAGCTAGTGAAA
TACTCATCTCCTTCCATTCTCATTATTACATGGAAAAAAAACAAGAAGTTTGACATGATCAGTAAGCAATTACAACAAATAAAAACCTGATATTTGACAT
GATAAGTATGCAACAACAAATAAAAACTCTCTTTTTCTACTTGTTAGCACAATGCATAGTCCTGCTGTCAGATATATTTGGATGGATATGCTATATATTT
TCATGAACTACAAATCACATTCACCAGCCAACAACAATTTGATTACTTCCAACTGCTTATTCAGTTTTAGTTGTTCATACAATGAAGAAAAAAATTATTG
GCTTCCAAAAGTGAAACTTAGCAAATATTCAGATAGTCTGTCCAAGCCAGCAAATGAACTCCTGAGAACACGGAAAATGAAGTATTTGTTTCACATATCA
TCTAACCAACACTAATCTGCATACCCCAGAAGCAAGAACCAGTAACAAAAACCACTCAGCTAGACTAAGTGTATGTTTTAAACTAATTCCACAGACACTT
CTCTACAAGGATGCAATTTTCTATTTTAAACCACATGACACTTTCTTGATTCCTCCTACCTAAAATTAACTATATTGTGACTCCCTAAAATGTAATATAC
GAAAACTTGTAAAACTCTCTCTTCTATGCTCAATTTTTTCCCTTAATCTTTGACCATTACCCAAACTAATAAACAACACAATCTGTTAATTAAGATGTGC
ATTCCTACCAGCAAATTTCATGCAAGATCCACGGTAAGGAAGATCCTACTGAACAAATGCAATACGTAGCAATTAAAGAGCTTAAATCTCCCCCAAGATC
CATGGTATCTTGCCCCTGCATCAAAATCCACATGGCAGGTAGAGGTAGTATGCCTGTGATGGCGAGGTGGATTTGCAGTCCAAATCCGGTGGTGTCATTC
AAAGTGGTACAGCAATAAACGACGCTGCGGCCGGCCGTGGGCGTCGCGGCCGGGCGACGGCGAGGACGAGGCCGTGCGGCGGTTCCGTGCGATGTGGAGG
CCGAGACGGCGTGGTGGGGCTGTGCGGCGGACACGAATCCCCTCGGCTTGCCACCATCGAGCTCCTCCCCCAATCCAGCAACCAGGAGGAGGGGACGGCG
GCGGGCCGGATTTGAGCCGCAGCCGCTCGAGGAGCCCCGTCGCCATGCTGTCCCAAGCTTGAGAGGGGAGAGGCATTGTCTTCGTCGGATCTCGTCGCTG
CCGGCGTGCTGCTCCCCAAGTCCCTGCGCGCCGTCACCGAGCTCCTCGCCCCCATCAAGCGACGATGAGGAGGAGATGGAGGGTCGCCGGCGCGTGCGAG
GAGAGGGCCTCGCCCTGCTCTCACCGGGGACGTCATGGGAGAGGCGGCAACGAGGACGAGAGGAGAGGTGGGGGTAGGGGGAGAGGCGGCCACTAAGCGG
AGGAGGTGGCGGCTGCGAGCCTGTGACGACGAGAGGATGCGAAGCGGCGGCGGCGGCGAGGCCCGTGGAGAGAGGGCAGAGTGCGAACTATTTTCTTTTT
TTTTTATTTCCTCTCTTTTATTA