Detailed information on CNT30577453


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007004, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555968Oryza barthiiOryza glaberrima73.7374.0592.78859forward
CNT30370860Oryza barthiiOryza glumipatula25.8494.6595.68301forward
CNT30103752Oryza barthiiOryza rufipogon31.5957.9589.4368forward

Expression of CNT30577453

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MGVQFGSLFKFLWVSADHAYSALPANARIYSLLSGMETTITIHACTGWELLSSLTWCLEMCFHQRKKALCSCFIVNDVYMYFLVPYCTC*

>peptide 2 (38 aa)
MCNMVSIWFFDSGFNYSSTMRSHGSAIWFFIQVPVGKR*

>peptide 3 (43 aa)
ELNPTSPHSAATPLPGRHLLPPLLLCSHFSLLQQIALSISPPS*

>peptide 4 (32 aa)
MDRTVGMILLLVQFITVCRECPHLQGSLCRNF*

>peptide 5 (36 aa)
MHGREVAPLYTHLSAHYQTILPRSIMILKPYHGLVL*

>peptide 6 (29 aa)
MGTTIFFNLVFGNVFPSKKESLMFMLYCQ*

Sequence

>CNT30577453
GGGAACTGAATCCCACTTCCCCTCATAGTGCCGCCACCCCTCTCCCTGGCCGGCACCTCCTTCCTCCCCTTCTGCTGTGTTCGCATTTCTCCCTTCTACA
GCAAATTGCTCTCTCTATATCTCCGCCTTCATAGCTTGGATCAAGAAGCGAAGTAGAAAAACGAAACGAGGAGGAGGAGAGAAGTAAAAGGAGGGGTTAG
ATCGGAGTCTCCCCTATTGTCTCCTTACAAGTTCTCTAAAGAAATCCTAGGTGGTGATCCATCAGATCGTGCATGATACCAATCCTTCGTTGGAGGCAAG
TGCATGACGAACTAATTGTGTGATTCATGGATTGTTTACTCTATCTATTTATTTCTGATATATTTCTACGTGATAAGTAACTGCTTATGTTCATATTATT
GTTCACACCATTTAGATTTCAAGTTGGTCTTATGTGTACGATGTTATTCTTGTTTTAATATTCTAGATTCTGGTTCTGCTTAAATAATTCAAGTTCCCTG
CTTGTCATGGATGTGTAATATGGTTTCAATTTGGTTCTTTGATTCCGGTTTCAATTATTCAAGTACCATGCGTAGTCATGGGAGTGCAATTTGGTTCTTT
ATTCAAGTTCCTGTGGGTAAGCGCTGATCACGCTTACTCGGCTTTGCCGGCAAATGCTAGGATATATTCACTATTGTCCGGGATGGAAACTACTATTACA
ATTCATGCCTGCACGGGATGGGAACTACTATCTTCTTTAACTTGGTGTTTGGAAATGTGTTTCCATCAAAGAAAGAAAGCCTTATGTTCATGCTTTATTG
TCAATGATGTGTATATGTATTTTCTAGTTCCATATTGTACTTGCTGAGTATTTTTATACTCACTTTTGTATTTTATTTGGTTTTAGGTACGTATTGAAAC
CGACATGCATGGGCGGGAAGTAGCACCTTTATATACACATTTATCTGCACACTATCAAACTATATTGCCTAGGTCCATAATGATACTTAAACCATATCAT
GGTTTGGTCTTGTAATAATCTTTTAGATTTCTAATAGTTTCTTCCCCATGGATTATAAGGATGGATCGCACTGTAGGAATGATATTATTATTAGTTCAAT
TTATAACTGTTTGTCGTGAATGTCCACATTTACAGGGGAGCCTCTGCCGAAATTTCTAATAATTT