Detailed information on CNT30577445


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 8e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554733Oryza barthiiOryza glaberrima10028.8100324forward
CNT30596734Oryza barthiiOryza meridionalis29.9413.7298.9797forward

Expression of CNT30577445

Peptides detected in this lncRNA

>peptide 1 (37 aa)
VVLGSSSCLLCCRASPTPSLLPGPLRPLSAARRGFRL*

>peptide 2 (74 aa)
SRSRVVIVFVVLPGISNAVAASWTSPTPFSCTERIPVMSYASCVVIALPRAARAMRALVGLWHHWFYLLLMNSI*

Sequence

>CNT30577445
TAGTCGTTCTCGGGTCGTCATCGTGTTTGTTGTGTTGCCGGGCATCTCCAACGCCGTCGCTGCTTCCTGGACCTCTCCGACCCCTTTCAGCTGCACGGAG
AGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCCGAGGGCGGCAAGGGCAATGAGGGCCCTAGTGGGGTTGTGGCACCACTGGTTTT
ATCTTTTGCTTATGAACTCTATTTGAGACTTCCGCTGCTATATTTATGTGTTGTATGTTGGGACCTCGGACCCTATTATGTGTCATGTACCTCGCTGCAC
TTTAACCCTATTATGGTACTTGCT