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Detailed information on CNT30577412


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695239Oryza barthiiOryza sativa90.0510099.82552forward
CNT30103119Oryza barthiiOryza rufipogon69.82100100428forward

Expression of CNT30577412

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LILLNLPDVLFNFLCCHQPSFPHLLRSHFLPTLPWR*

>peptide 2 (83 aa)
MSWDSLESWRESLRGGEGSRCCLDFRGGDKSSCPPATSLPFGDGVSCCLRLCLGGDRSLPAASLGSGEGVSCRCLRRGGDRSFL

>peptide 3 (57 aa)
LSSSLIFLMSSLTSSAVINPAFLTSFGATSFLPFLGGEMSPSPKACLFSGGNLSLGS*

>peptide 4 (32 aa)
MSRAPPWWREVFGFFRIMPPLPAWWREVLWLL*

Sequence

>CNT30577412
CTCTCATCCTCCTTAATCTTCCTGATGTCCTCTTTAACTTCCTCTGCTGTCATCAACCCAGCTTTCCTCACCTCCTTCGGAGCCACTTCCTTCCTACCCT
TCCTTGGAGGTGAAATGTCCCCATCACCCAAAGCCTGCCTTTTCAGTGGTGGCAATTTGTCCTTGGGTTCATGAGAGTCGTGCCGCGTCCGTCTGCGTGG
GGGAGAGAGGTCTTCGGGCTCTTCTGAATCATGTCTCGTGCGCCTCCGTGGTGGCGAGAGGTCTTTGGGTTCTTCAGAATCATGCCGCCCCTTCCGGCGT
GGTGGAGAGAGGTCCTGTGGCTCCTCTGAGTCATGCCTGGTACGCCTTCGTGGTGGTGAAATGTCCTGGGATTCCTTGGAGTCATGGCGAGAGAGCCTGC
GTGGAGGAGAGGGGTCTCGTTGCTGCCTAGACTTCCGCGGTGGTGACAAATCATCATGCCCCCCAGCTACCTCACTACCCTTTGGTGACGGCGTGTCTTG
CTGCCTTCGCCTCTGCCTCGGCGGCGACAGATCCTTACCCGCAGCATCTCTCGGGTCCGGCGAGGGCGTATCCTGCCGCTGCCTCCGCCGCGGAGGAGAC
AGATCCTTCCTTC