Detailed information on CNT30577378


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000427, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697923Oryza barthiiOryza sativa63.63100.292.881503forward
CNT30552893Oryza barthiiOryza glaberrima76.8469.0991.241815forward
CNT30370799Oryza barthiiOryza glumipatula30.3695.0988.7717forward
CNT30109864Oryza barthiiOryza longistaminata73.6290.6293.961739forward
CNT30103930Oryza barthiiOryza rufipogon74.3974.7791.81757forward
CNT30118054Oryza barthiiOryza nivara48.69100.2691.391150forward
CNT30603852Oryza barthiiOryza punctata30.1456.2487.22712forward
CNT30550878Oryza barthiiOryza brachyantha8.8520.7183.25209forward

Expression of CNT30577378

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MCVPTTDPGIGTDKHKRFPISKIRGSTELVSEYIDYSSRP*

>peptide 2 (54 aa)
MQTPSLSAFFPRMHFIEHHAITLSPSLEITIARLPGRSWRLEGVEEELCCRRRH*

>peptide 3 (33 aa)
ATPATLAPPLLHGSPNPRVSERGGNLPASTSLT*

>peptide 4 (33 aa)
MTPRVHEDVSSWSGYCQCKVIERLCRDVSHVLG*

>peptide 5 (30 aa)
MIFKNSALRKVTIATPCIIMYIAAICVVAC*

>peptide 6 (29 aa)
MLIPIVKLFCLQIKLHAVMNILLVIMPCL*

>peptide 7 (34 aa)
MIGVQFHSRSRSPVDCLWHVNRALVLFCLPLLFL*

>peptide 8 (34 aa)
MVVSLRTLYFTKLFLSAEKKKNVKTFKCCFPILPL

Sequence

>CNT30577378
TGCGACGCCTGCAACCCTAGCGCCACCATTACTCCATGGATCCCCAAATCCCCGAGTCAGTGAGAGAGGAGGAAACTTACCCGCGTCAACCTCCCTAACT
TAGGCCGTATAGGCAGCCATCGAGTGTACCAGCTGCCGATCTTATCCTCCACGCCATCCTGGCTTATCTCCAAGCCAAGCCCCCATGCAAACCCCATCCC
TCTCTGCCTTTTTCCCTCGAATGCATTTCATCGAACACCATGCGATCACTCTCTCACCATCACTAGAGATCACCATTGCGAGGCTCCCCGGCCGGAGCTG
GAGGTTGGAGGGAGTGGAGGAAGAGCTTTGCTGCCGCCGTCGCCATTGAGGGAGTCGAGGCCGCTGGACGTTGGGAACCACGCATCGAACACCTACAAGC
GTCGCCGACCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCCGCGCGCCGCCGAACTTCGTCATCCTGCCGTCTCTCGAAATTGTATATCGGTTAGTCGT
GAGGCAACGTATGCAACTTCCAGGAGGTGAAGGTTGATCAAGATTATATTAAGAATAAGAACTATCCTGAGCAGGCAAGTCATCACCCCATCCCTTGAGC
ATGTTGATCCCAATTGTAAAATTGTTTTGTTTACAAATAAAATTACATGCAGTGATGAATATCCTACTTGTTATTATGCCATGCCTTTGATTATTGCNTA
TCTCATTATTCCCTTGTACCCATAATTACGTATGAGTCCCTAGTCACTTATGGCAAATGCTTAGTAATGCTAATTTAGATTCATGCATTCTCATGTTTAT
CAAATGCTTTATGCTTGGGCAACTACCTTAGGGAAGGTAGTTGAGATACGGCATGTGGAGACATGAGTGCCACATTGCCAAGATATTGATGAGATGATTT
GTGAAAGAAAAATTAAAACTAAACAAATATTTTCGACTGGGGTGGCTGGATGACTTGGGTGGAGTCTGGTAAAGGCTAGTGCCGCCCCTGGTCAATTAAA
GACCGAGCCATGAAGTTAAGCATGAAACGACCCCCGTACAACCGTACTTCTCGAATGTGTATAGACCTAGCGGAGTAACTAGCTGAGCGGAGGCAGTATC
CCTGCATAGTGGTTTTCTTGATGTGTGTGAGCAGGGGCCTACGGTGGGGCAGCCATTGGTAGGACCGCGAGGAGCGGGTGCCTACAGCGGTGTTGCCATC
GGTAGGACTGCCATGTGTAAACCTAAACTTAATTATAACTTACTGCATGTGTGAGTCTTCCCTTCCCGGGAGCGCCAGAACTCCTCTCACTGCTAGAAAC
TTATGACGCCTAGAGTGCATGAGGATGTAAGTTCATGGAGCGGGTACTGCCAATGTAAGGTTATTGAAAGGCTTTGCCGTGACGTGTCTCATGTGTTGGG
ATGAGGCTCATGTGTTGGGCAATCGCGGAGTACGGTAAAGTGTACATCCACTGCATTGTGAGTAAACCAAATTTATTTGAATAGTCGTGCTCGCGGTTAA
TGAGCACCGGGACATGTATTACACTTGGCTAGACTCAAATTTCTTAATATGATTGGGATGGGATATTGCATGATGATTTTGTACTGGTGGATCAACTTCT
CGGGAGGCGAGAAGGGGTAGACCACAGAAAACCATGACGGCAGTGGCGAGAAGCTATCCTTGGGAACACAATGGATGGTGGACAGAACCGTCGCTGTTTA
ATGAACAATGGAATTAAAACTTGATCAGTTTATGCTAGGTCTTTGGTTTGTGAAATGATATTTAAAAACTCAGCTTTACGCAAAGTAACCATAGCCACTC
CTTGTATTATCATGTATATTGCTGCAATTTGTGTGGTGGCTTGCTGAGTACTTTTGTACTCATTGTTGCTCTAAATATATATCTTTTAGCAGAGTGTTGA
AGAGAAGCCCTTGTTAGTGTGCTTGCGTACCTAACAAGATGATCGGAGTGCAGTTCCACTCTAGGTCTCGTTCCCCAGTCGACTGCTTGTGGCATGTCAA
TCGGGCCCTTGTATTATTTTGCCTTCCACTGTTGTTTCTCTGATAGTTGTTGGCCTGCCTAGCCCTAATGTAAGCATTTAACTCTTTTAGCCTGAATTCA
TTCGTGATATGTTGTGATCCAACTATGTATGTGTGTACCAACTACTGATCCAGGGATTGGTACTGATAAACACAAGAGATTTCCGATTTCCAAAATCAGG
GGGTCGACAGAGCTGGTATCAGAATATATCGACTATAGTTCGAGACCCTAGATAGAATGGTCGTTAGTTTAAGGACCTTATATTTTACAAAGCTATTTTT
AAGTGCTGAAAAGAAAAAAAATGTGAAAACATTCAAATGTTGTTTTCCCATCTTACCTCTTC