Detailed information on CNT30577355


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104774Oryza barthiiOryza longistaminata73.4396.7795.71210forward
CNT30102993Oryza barthiiOryza rufipogon10082.6699.65286forward

Expression of CNT30577355

Peptides detected in this lncRNA

>peptide 1 (39 aa)
NAANYTAASGLPSFPTRCRLPPSPPPSPSLPRSLLWMPR*

>peptide 2 (87 aa)
ETQPIIPRLQAFLPSLLAVAFHHLRHLLLPSQDLFFGCRAERFAFLVGWLIDPVPGFGEELKVAPWRSSRFFDCLFDWWFLSEKRRD*

>peptide 3 (49 aa)
KRSQLYRGFRPSFLPYSLSPSTISATFSFPPKISSLDAALKDSLSWLVG*

Sequence

>CNT30577355
GAAACGCAGCCAATTATACCGCGGCTTCAGGCCTTCCTTCCTTCCCTACTCGCTGTCGCCTTCCACCATCTCCGCCACCTTCTCCTTCCCTCCCAAGATC
TCTTCTTTGGATGCCGCGCTGAAAGATTCGCTTTCTTGGTTGGTTGGTTGATCGATCCGGTGCCCGGATTTGGGGAGGAATTAAAGGTGGCGCCTTGGCG
AAGCAGTAGATTCTTTGATTGCTTGTTTGATTGGTGGTTCTTGAGCGAGAAGAGAAGAGACTGATTGATTGGTGGAGAAGCTGTGA