Detailed information on CNT30577328


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001330, E-value = 2e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675591Oryza barthiiSetaria viridis9.7838.8188.96163forward
CNT30555807Oryza barthiiOryza glaberrima15.1925.499.6253forward
CNT30468665Oryza barthiiSaccharum spontaneum7.0849.7982.2118forward

Expression of CNT30577328

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MDFSWYNFTTGAPAPVLSPAMTARAQVCWLKS*

>peptide 2 (36 aa)
MMFFSYSNPCCDIYFQHVVILKSKGKIIKSYFLDTT*

>peptide 3 (39 aa)
MSHLQGTHADTGMQALWTHQAGSWISHGITSQLEHLLRC*

>peptide 4 (54 aa)
KGQVAKQCPARRIKRMLLMTEPLFNGSPLQNILSQQERIPTLFIGFCYIAANCS*

>peptide 5 (32 aa)
MIWHASKYGNSTLQFFNIRSLSASNEKQREDA*

>peptide 6 (67 aa)
ERPGGKTMPGSEDQTHAPHDGAIVQWKPSPEHPFPAGKDTHAVHRFLLYSGKLLLILQVRRRVSTIF*

Sequence

>CNT30577328
GAAAGGCCAGGTGGCAAAACAATGCCCGGCTCGGAGGATCAAACGCATGCTCCTCATGACGGAGCCATTGTTCAATGGAAGCCCTCTCCAGAACATCCTT
TCCCAGCAGGAAAGGATACCCACGCTGTTCATAGGTTTCTGCTATATAGCGGCAAATTGCTCTTGATTCTGCAGGTAAGAAGAAGGGTCAGTACCATATT
CTGACTGAAGACTGAAGATGCACCATTACTATATTTCTGGTTTCTGTGGACAGTGTTTAAAATTCCTGCACCAATCATTTGCAGGGTGGATGCACAAGAC
ATAAATTGAATTCAACTTATTTGATTCGGTTCAAAAATGTCTCATCTACAAGGCACGCATGCTGATACAGGCATGCAAGCACTCTGGACACATCAGGCAG
GATCATGGATTTCTCATGGTATAACTTCACAACTGGAGCACCTGCTCCGGTGCTAAGCCCTGCCATGACAGCAAGAGCTCAGGTTTGCTGGTTGAAGAGT
TGAATGATATGGCATGCAAGTAAGTATGGTAACTCCACCCTACAATTTTTTAATATAAGAAGCTTATCTGCCTCCAACGAGAAGCAAAGAGAAGATGCTT
AAAGTGAGAACCTAGAAAAAAGTTGTGACACCGTGACATGATGTAGTAAGAAATAAAATGGAATTAAAGAAAAGGAAAAGGTAAAGAGAACAAAGGGGAG
GGAAAAAAGCAAAAGGTAAAGCAAATAAAATATGGAGATTTGAACAGTGATGATGTTCTTTAGTTATTCCAACCCTTGCTGCGATATCTATTTCCAGCAC
GTTGTGATTTTAAAGAGCAAAGGTAAAATAATAAAAAGCTACTTCTTGGACACTACCTAGGTACAAACATTATTATACTGCCAACTGAACGGGAGGATAG
ATCGTATCAGATGTACTCCCCTATTAGCTAACATCGCTTTATTCATCCGTTGCCCCTTTAACCAAAGGAGATGCAAGGTGCTCTGGTGCGTAAATTCACA
TGTTTTGTCACAGAAGGCAAGTATAAAATCAGAGACTAGCAGCAGTCCAGCACAAGCCTCTAGCAGCAGCAGACAAATGGGATGATGATGGGCACCGAGG
GTGCCTTTGTACCAGGCTACCAGGTTACCCATACCTGCTAGTGGTAGGTTTGAAACCTTCCAATAGAGGCCTGATTTAGTTTCCAACTTTTTCTTCAAAC
TTTTAATTTTTCCATCACATCAAAACTTTCGTATGCATATAAACTTTCAACTTTTTCATCATATCGTTCCAATTTCAATCAAACTTGCAATTTTGGCGTG
AACTAAACACACCCAAAGTATACTCCCTCTATCCATAAATATAAACGTTACAAGGGTTTAAAATTTGTCCATAAATATAAAAAATTACATTCAAGTTTCT
TCTCATCTTACATTTAACTATCTTTCCACTTCCAACCATCTCACATTTAACGAGGAATATCAAAATCTTTTCTCCTCAACTTTATTTTCTGCTAAACAAC
TGGTAAATTCCTTCCATTGGGAAGCTCCTGATTAGGGGGTTCAAATCGTGGTCTCGCAAAAAAAAAACATGGGTTAAGAATCAACCTATGGACTGTGGTC
TTAAAGCACGCGTTAAGGTCCGATTCATAAAGGATTGCTCCCTCTGTGTGTTGTTTGGGGGGGGGG