Detailed information on CNT30577320


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554621Oryza barthiiOryza glaberrima49.54100100215reverse complement
CNT30664460Oryza barthiiTriticum dicoccoides45.1654.1498.98196reverse complement
CNT3068134Oryza barthiiLeersia perrieri47.9357.4693.27208forward
CNT30370808Oryza barthiiOryza glumipatula49.7799.5499.54216reverse complement

Expression of CNT30577320

Peptides detected in this lncRNA

>peptide 1 (62 aa)
TCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTSFITERSFRGLSW*

Sequence

>CNT30577320
CCACATGCATTTTGACATCCCACAGCTTCGGCCGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAA
AGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTG
TTTCCCTCTCGAGAGCAAGACGGTCAATTTTCTGTGCAAAAAGCAAGGGAAAAATATTGAACACTACTATGATTCTGTAATGCTCAAGACTGCCAAATTC
ACTAGTTAACACCTGCTGTGTTTCCGCGTTATCACTACCACTTTTTTCTTAATTGAAACAGAGTTACTGCAGCTTTTATTGAAAGCCGAAAAATGGTAAG
TCATGACTTTCTATGAAACCTCAGTATTGTGCGG