Detailed information on CNT30577315


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001102, E-value = 2e-174

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370969Oryza barthiiOryza glumipatula43.6841.6498.68152reverse complement
CNT30102986Oryza barthiiOryza rufipogon41.0947.9999.3143forward
CNT30551479Oryza barthiiOryza brachyantha38.5121.9788.06134reverse complement

Expression of CNT30577315

Peptides detected in this lncRNA

>peptide 1 (35 aa)
RTGGAQHFQVKMNFVSSLLAILLNKKPLLPVLLNS*

Sequence

>CNT30577315
ATAGAACTGGAGGTGCTCAGCACTTTCAGGTAAAAATGAACTTTGTGTCATCACTTCTAGCAATATTGCTTAACAAGAAGCCATTATTGCCAGTACTCTT
GAATTCCTGAGAATATGTATGTGTGTATGCATGTGTGATGACTGACAGGTTGCCTTCCAGATAGATAGATAGATAGACAGACAGACAGGCAGGAAGGCAG
CCAGGCAGGCAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAAGAGACCATTTGGCAAGAGTACCCGGAT
TAGAAAGAATCATCACAGCACCCTCCAGTTCCAGCGTGTTTTAACACA