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Detailed information on CNT30577279


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84UP7|CSLF6_ORYSJ, E-value = 1e-169

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675927Oryza barthiiSetaria viridis19.4255.9989.3215forward
CNT30554527Oryza barthiiOryza glaberrima29.0934.81100322forward
CNT30688461Oryza barthiiTriticum urartu15.8137.7288.57175forward
CNT30150088Oryza barthiiBrachypodium distachyon17.830.1788.83197forward
CNT30103100Oryza barthiiOryza rufipogon35.5942.9299.75394forward
CNT30594959Oryza barthiiEragrostis curvula11.3838.8991.27126forward

Expression of CNT30577279

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MHAQCSVVCVVAAACSRTYSSRVCCCWCCWCRLVLVCVFFFVSGDGVLMARRRARR*

>peptide 2 (35 aa)
PQVIKKLNQINTIFFLDKTKKKEKEREEGAKRGKK*

>peptide 3 (54 aa)
MLMYATRCSGCRNVLPNSGLFLEKKISSEPVDHRSTWNSLSVRLIGAVPMNACG*

Sequence

>CNT30577279
CCACAGGTAATTAAAAAACTAAATCAAATAAACACCATCTTTTTTCTGGACAAAACTAAAAAGAAAGAAAAGGAGAGAGAGGAGGGGGCAAAAAGAGGAA
AAAAATAAGGTTAAAAGAAAAGAAGAAAAAAAAAACTTTCAAATTTTGGCGGGTCGCTCGATCAAATGCATGCACAGTGTTCAGTAGTATGTGTTGTTGC
AGCAGCGTGTAGTAGAACGTACTCATCTCGTGTTTGTTGTTGTTGGTGTTGTTGGTGTCGTCTTGTTCTTGTTTGTGTTTTCTTCTTCGTCTCCGGCGAC
GGCGTCCTCATGGCCAGGCGTAGAGCACGGCGGTGATGACGAAGGTGAAGGCCCACCAGACGAGCACCACCACCGGCGTCTTGCCGTGCTTCCCGAGGAT
GCCCTTGGCGAAGGGGTAGAGGTGGAAGAGGACCCAGAAGTTGAAGAACACGCCGCCGGCGACCTTGAGCCAGTGCGTCCACTCGCCGTCGAGCACCTTG
GCGAAGGCGACGGCGGAGCCGATGATGTTGACGAGGATGATGATGATGGGGGTGATCATGAGCCACGTCCACCGCACCACGTACAGGTCGGCGTAGGGGT
CCTTCTTCTCGTCGCCGGCGGGGAGCTTGGAGGTGAGCTTGAACGAGATGTCCCGCCGGAACACCACCTTGGTGACCACCTGCAGCACGGCGGCGAGGTA
GACGTAGAACATGGTGGTCGGCCTCTGCACGATGAAGTGCCCCGTCACGAACGACAGCGCCGGCACGGTGGTGTAGAAGATGAGGAACAACGCCGTGAAC
GGGTAGGTGGTGATGTTGATGTACGCCACGCGCTGCAGCGGGTGCAGGAACGTGCTCCCGAACAGCGGGTTGTTCCTCGAGAAGAAGATCTCCAGCGAAC
CCGTCGACCACCGGAGCACCTGGAACAGCCTCTCCGTCAGGTTGATCGGCGCCGTCCCGATGAACGCGTGCGGGTAGATGGAGCAGTAGCGCGACCTCCA
CCCCTTGATGTGCATCCGGTAGCCGGTCACCACGTCCTCCGTCACCGTGCCGTACACCCACCCGATGTCGCTCCCCCACCCGGTCTTCTTCTCGTACGTC
GCCGCCG