Detailed information on CNT30577275


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006283, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555679Oryza barthiiOryza glaberrima27.9399.8194.35531forward
CNT30338809Oryza barthiiEragrostis tef35.0930.9982.16667forward

Expression of CNT30577275

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MKAIRCKRARPGRGGTLQNGIRADSRGFTGACVAVAQPGVVTRHGTCAGTGHMDVAKRGRSWPGVDRRGRRSLLRG*

>peptide 2 (86 aa)
DTGTGAGAAGGIGGAAGAADGGGFLGASWMRTGAVVVLRGVVRIRTPPGAGRPFNWAFSFFRRAISSFRAMILTSFPSFQGLGRLV*

>peptide 3 (33 aa)
MGDRPGNSSRVHMSEDKVCRKDMCWSVRAVYDL*

>peptide 4 (52 aa)
MKAIRCKRARPGRGETLHRGGWRRWRWRRRRGGGWRRSQRCGLWQCAMRQWW*

>peptide 5 (55 aa)
MVSEPTLAVSRARVSQWRNREWLHGMAHALALDTWTWPREDVPGLGLIDGGVDLS*

>peptide 6 (70 aa)
TRERELELRAGLEVLRELLMEVGSWAQAGCARVQSSSCGAWCGSGLLLALGDPSTGHSPSSGVLSHPSEL*

>peptide 7 (33 aa)
MGDRPGNSSRVHTSEDKVCRKDMCWSVRAVYDL*

Sequence

>CNT30577275
TGACACGGGAACGGGAGCTGGAGCTGCGGGCGGGATTGGAGGTGCTGCGGGAGCTGCTGATGGAGGTGGGTTCCTGGGCGCAAGCTGGATGCGCACGGGT
GCAGTCGTCGTCTTGCGGGGCGTGGTGCGGATCCGGACTCCTCCTGGCGCTGGGAGACCCTTCAACTGGGCATTCTCCTTCTTCAGGCGTGCTATCTCAT
CCTTCAGAGCTATGATCCTCACTAGCTTCCCATCGTTTCAAGGCCTTGGACGCCTTGTGTAGATCCGAGTGCATCCTATCCAATCCCCTCATCACAGCAC
ACATGTGACCAAAGGTGGTGTCGTTCTCGCCGGCTGTCGGACGGAAAGTACTGACATCATCACCACTGGCTTGACGAGGGTGAAATCGGTACGCCGTGTC
GTGGAAGATGTAGTTGTGGCGCTCCCGTAGTCTGGCCATCATCAGGTATGCTGCCTCCTGACAGGCGTGNTCTGCTGTGCCTCCGGATGCCTCAACCACC
ATGTTAGCGAGGCAAGTACCCACGTAGCCATGGACCTCCAGGCGGACACGTGAGGAAGCTCGCCACTGAGCGGTGGAACAGTCGTGTACTCTGGCGCGTT
GGGGTAGCCCACCACCAGCGTCATACGTGCTAACTCTGCCACAAAGTCAATCATGCCTTCTCCGNGGTGGTTGGGTGGGTGGNCGGCCATCTAGAGAAGA
CAAAGGAGTAGGATCAATGCATGCTCAAATCCAAATTTAAATAAAGCAATAAAGGACTCAAATAAGAAAAGCGAGTAAGAACGAAATTTTATGCATATGT
AACATCCCGGCCTAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAGGGTTAA
GCGTGCTTGGCCTAGAGCAATTTGGGATGGGTGACCGACCAGGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTG
GTCTGTGAGGGCAGTTTATGACCTATGAAAGCTATCAGATGTAAGCGGGCCCGGCCTGGGAGAGGCGGGACGTTACAAAATGGTATCAGAGCCGACTCTC
GCGGTTTCACGGGCGCGTGTGTCGCAGTGGCGCAACCGGGAGTGGTTACACGGCATGGCACATGCGCTGGCACTGGACACATGGACGTGGCCAAGAGAGG
ACGTTCCTGGCCTGGGGTTGATCGACGGGGGCGTCGATCTCTCTTAAGGGGGTGAGGGTGTAACATCCCGGCCTAGGGCTTAATAGGATTAATAGAATAC
TCATATCAACAAGTTGCAACTTCTTTTTCGGAAGCCAATCTCCAAAGAACTCCAGGGTTAAGCGTGCTTGGCCTAGAGCAATTTGGGATGGGTGACCGAC
CAGGAAATTCTTCCCGGGTGCACATGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGCAGTCTATGACTTATGAAAGCTATCAGA
TGTAAGCGGGCTCGGCCTGGGAGAGGCGAGACGTTACACAGGGGAGGCTGGAGGAGGTGGCGGTGGCGGCGGCGGCGCGGTGGGGGCTGGAGGAGGAGTC
AGCGCTGTGGCTTGTGGCAGTGCGCTATGCGGCAGTGGTGGTAGGGTTTGTTTTAGTGGTTTTATTGGGCTTCCTAGGTCTATTGGGCTAAAATTTCAGT
TAATTCGGTTAACCGAGCCCAATAACCGAAATGACCGAAATAAATTCGGTCTTTTGAGGGCTAGGATCGAAAAGATAACCGAATTTCTCGGTCTCGGTCT
TTTCGGTTAGGTTCTTCGGTTCGGTCTAAATATCTCCACCCCTACCCATCATTATGGTTTGGTTACTATTTCACTAGTTCAGTCTAAACAGTACACTTGG
C