Detailed information on CNT30577195


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555133Oryza barthiiOryza glaberrima59.0126.796275forward
CNT30369977Oryza barthiiOryza glumipatula100.6463.9894.67469forward
CNT30102475Oryza barthiiOryza rufipogon85.6294.7797.49399forward
CNT30117522Oryza barthiiOryza nivara59.4427.6796.03277forward

Expression of CNT30577195

Peptides detected in this lncRNA

>peptide 1 (37 aa)
GHRRRRTPASSPDSLVRFASCWMYTLGHSRSVTHTLF*

>peptide 2 (53 aa)
RPPPPPNSSVKSGLACSVCFLLDVHIRSFKISNSYSILASWLLVRILNSHCIA*

Sequence

>CNT30577195
AGGCCACCGCCGCCGCCGAACTCCAGCGTCAAGTCCGGACTCGCTTGTTCGGTTTGCTTCCTGTTGGATGTACACATTAGGTCATTCAAGATCAGTAACT
CATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATAGAAGATCGGAGTGTTATACATCAATCAATT
TCTTAGCTGGGAGTGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACATAATCTATAGCGAGGAGTAACAAAGCTTATTTT
TGCATTGATGATGCAGGAGCTCGCCGCTGATGCCACCGTCTTGTTGCCGACCTTGACGAAGTCGAGGACCACGGTGTAGTACGTGTCCACGTCCCCGGCG
ACGAGCGTCGTGCTCGCTGCGCCGAGCTTGGTGACGTTGGTGAGGGTGCCGAAGTTGAGCGCCGAC