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Detailed information on CNT30577143


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 3e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Oryza barthiiOryza sativa64.338.76100326forward
CNT30289434Oryza barthiiTriticum aestivum47.5341.6292.95241forward
CNT30221546Oryza barthiiHordeum vulgare40.4389.9194.15205forward
CNT30554471Oryza barthiiOryza glaberrima96.8489.1199.8491forward
CNT30436341Oryza barthiiAegilops tauschii36.2960.5394.02184forward
CNT30251924Oryza barthiiAvena sativa46.5543.3893.22236forward
CNT30658643Oryza barthiiTriticum dicoccoides46.5553.2791.1236forward
CNT30450022Oryza barthiiSaccharum spontaneum46.1522.6393.59234forward
CNT30680880Oryza barthiiTriticum urartu46.5545.6591.1236forward
CNT30596591Oryza barthiiOryza meridionalis46.3549.8997.87235forward
CNT30370660Oryza barthiiOryza glumipatula10088.3398.22507forward
CNT30148227Oryza barthiiBrachypodium distachyon33.7367.8689.47171forward
CNT30102628Oryza barthiiOryza rufipogon98.2239.2498.8498forward
CNT30117165Oryza barthiiOryza nivara89.15100.8998.67452forward
CNT30604388Oryza barthiiOryza punctata30.7746.9998.08156forward
CNT30556620Oryza barthiiPanicum hallii43.5922.4694.12221forward

Expression of CNT30577143

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLFTMRMQRKPLPTSLLSVHSTDSSWYSGL*

Sequence

>CNT30577143
GTTTAATCAAGCCCCAACTGTATGTGTTTATATATGTGTCGCCCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAATTAACTTGTACAGATACAAGATAC
AAGCACACCACACGATAATCATACGGTACGGACGAGCATAAGTTACTCTTAGCTACGTATATAGGTGGGTAGCTAGCAGAGAATAATTATTCTGCACCAG
ATTCGTTGATATCAACTTGAGCCTTGATAGAGAGCTGGATCGATGTATCGATCAGCTCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGC
ACCACTTCCAGAGCACGATGTCGGTGCCGTCGCGGACGCCGCCGTGGTACTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCG
GATGCAGCGGAAGCCCTTGCCCACATCCTTGCTCTCCGTCCACAGCACAGACTCGTCCTGGTACTCTGGGTTGTAGGGAACCAGCTTCACCTGCATGCGC
AGAGCAA