Detailed information on CNT30577135


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004305, E-value = 1e-08

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554817Oryza barthiiOryza glaberrima1003.7396.7303forward
CNT30371473Oryza barthiiOryza glumipatula98.359.9694.97298reverse complement
CNT30101670Oryza barthiiOryza rufipogon37.953.7384.35115forward

Expression of CNT30577135

Peptides detected in this lncRNA

>peptide 1 (29 aa)
NQRMILVITQLQFKCTVVASVTFVISYCN*

>peptide 2 (36 aa)
MSTEFFKKFKNDSIYSPVTFRCTVVTYVTFVICNCN*

Sequence

>CNT30577135
AAAATCAAAGGATGATTCTAGTTATAACCCAGTTACAGTTCAAATGTACTGTAGTTGCTTCTGTAACTTTTGTTATTTCTTACTGTAATTGACCGTAGAT
AGATAGTTCTTTATATATTTGTAACCTAATTTAGAGCTTGTTATACTAGGGGAAAGTGTTTTAATGTTGCTGCATGAGTACTGAATTTTTTAAGAAATTT
AAGAATGATTCCATTTACAGCCCAGTTACATTTAGATGTACTGTAGTTACATATGTAACTTTTGTTATTTGTAACTGTAACTGACTATAGATTGATAGTT
TTT