Detailed information on CNT30577134


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YVM4|CESA6_ORYSJ, E-value = 2e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671404Oryza barthiiSetaria viridis54.7238.4189.08174forward
CNT30314324Oryza barthiiCamelina sativa24.5321.3185.978forward
CNT30346665Oryza barthiiEragrostis tef87.7479.4989.25279forward
CNT30362276Oryza barthiiSorghum bicolor54.7283.6590.23174forward
CNT30706792Oryza barthiiPrunus avium67.6117.2181.86215forward
CNT3026780Oryza barthiiPopulus trichocarpa44.9715.9480.42143forward

Expression of CNT30577134

Peptides detected in this lncRNA

>peptide 1 (96 aa)
QGTVSQKWNGCPGIYDRVNIRKSFQKFQATTIPIPEWAMFAEENFNRSKSPTKDLVKTIRKIKRCRTFECWPLWNAVNRPPTMAVHLKPSQDIFST*

Sequence

>CNT30577134
CAAGGTACAGTAAGCCAGAAGTGGAATGGATGTCCAGGGATATACGATAGAGTTAATATAAGAAAATCTTTCCAAAAATTTCAGGCCACCACCATACCCA
TACCAGAGTGGGCAATGTTTGCTGAAGAAAATTTCAACAGATCCAAGAGCCCAACGAAGGACCTGGTGAAGACGATCCGAAAGATTAAGAGGTGCAGAAC
CTTTGAATGCTGGCCGCTTTGGAATGCAGTAAATAGACCGCCAACCATGGCAGTGCATCTTAAACCCAGTCAAGATATCTTCTCGACATGAACCATAGAC
TAGCAACATTGGTGAGCT