Detailed information on CNT30577102


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619448Oryza barthiiSesamum indicum98.2419.691.48223forward
CNT30197509Oryza barthiiPisum sativum98.249.887223forward
CNT30182368Oryza barthiiSecale cereale10011.1999.12227forward
CNT30299594Oryza barthiiTriticum aestivum10030.0399.12227forward
CNT30221864Oryza barthiiHordeum vulgare10011.1897.8227forward
CNT30390158Oryza barthiiTriticum turgidum10036.0999.12227forward
CNT30586133Oryza barthiiMusa acuminata104.4110.7283.97237forward
CNT30437984Oryza barthiiAegilops tauschii96.0457.6798.62218forward
CNT30468144Oryza barthiiSaccharum spontaneum98.247.9299.55223forward
CNT30210175Oryza barthiiHelianthus annuus42.7325.891.7597forward
CNT30627916Oryza barthiiDaucus carota97.366.1392.31221forward
CNT30427311Oryza barthiiPapaver somniferum56.393.4889.84128forward
CNT30574574Oryza barthiiVitis vinifera99.126.6892225forward
CNT3056795Oryza barthiiAmborella trichopoda37.8916.1793.0286forward
CNT30103415Oryza barthiiOryza rufipogon98.6822.56100224forward
CNT30115468Oryza barthiiOryza nivara92.076.05100209forward

Expression of CNT30577102

Peptides detected in this lncRNA

>peptide 1 (36 aa)
IKKKEEKELGVGAYITGSLLTKPSWQAPTVLLLFLT*

Sequence

>CNT30577102
AATCAAAAAGAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTA
TTCTTGACTTGACTTATTAATAAGAAAACTGCTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAG
GTCACAAATGGAGTTGAACCAAGTAAC