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Detailed information on CNT30577075


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694732Oryza barthiiOryza sativa51.6228.8192.23399forward
CNT30370776Oryza barthiiOryza glumipatula49.5545.3398.69383forward
CNT30106739Oryza barthiiOryza longistaminata25.175.7896.91194forward
CNT30102528Oryza barthiiOryza rufipogon51.6238.2292.23399forward
CNT30117109Oryza barthiiOryza nivara51.6255.3491.98399forward

Expression of CNT30577075

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MWVLHVIEIPMAYLKLCKIIMAWFQITLFSSGP*

>peptide 2 (35 aa)
MKKERKRQSNVEKFQRFHKLGKFVARCEGFQRWRS*

Sequence

>CNT30577075
CGCTAGCAGCCAGCCCTAGCCGCTCCTGCGCGCTTGCCGCCGCCGTCTTTGCATCGCCGCCACGACCATAGCCGGAGACCACAGCCGTCGGTGTTTCCTT
TCCGTTTTCCTTCTTCCCGAGAGAAGGGTACAGAGAGGTTGTACAGGATGAAGAAGGAAAGGAAAAGGCAGAGCAACGTTGAGAAATTTCAGCGATTTCA
CAAATTAGGGAAATTTGTCGCAAGGTGTGAAGGGTTCCAACGTTGGAGGAGTTAAGTCGGAGTATCGAAGGAGTTAAGGTACCTAATGATATTGATCGGC
ATGGGACGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACTACTAAAATTTAGTTTTAGACTATGTTTCTGCTTAGCATAAGTTTTGTGTAGAA
CTTGTAAAGGTCATTTTAAAAAGTTGGGAAAATTGGAACCATACCATTATAATTTTGCAAAATTTGAGATATGCCATCCTGACCCACATGTCATTGACTA
ATGTGGGTCCTACATGTCATTGAGATACCGATGGCATATCTCAAACTTTGCAAAATTATAATGGCATGGTTCCAAATTACCCTTTTTAGTTCCGGTCCAT
AGTTTCACGAGGAATTCATGGAGCTAGGATGGTTTGGATTGTGGGGTTATATCGTTATTGAGTATCTTATAACTGCCTGTCGTGGATGTCCGTATTTTTA
GGGGAAACTCTGCCGAAATTTCTAATAATTTTGGGAGTTAGTGGTTTTTAGTGTTTTTGGTGTGGCACTCTAG