Detailed information on CNT30577068


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 6e-51

BLAST vs NONCODE:
NONZMAT000139, E-value = 4e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672063Oryza barthiiSetaria viridis46.942.4492.24219forward
CNT30361377Oryza barthiiSorghum bicolor44.3318.3893.72207forward
CNT30370727Oryza barthiiOryza glumipatula98.7288.1598.05461forward
CNT30496422Oryza barthiiDigitaria exilis46.935.4990.41219forward
CNT30593977Oryza barthiiEragrostis curvula40.0484.2394.12187forward
CNT30551356Oryza barthiiOryza brachyantha34.0545.9598.11159forward

Expression of CNT30577068

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLTMRMQRKPWPTSLLSVHSTDSSWYSGLY

Sequence

>CNT30577068
CCCCAACTGTATGTGTTTATATATGTGTCGCCCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAATTAACTTGTACAGATACAAGATACAAGCACACCAC
ACGATAATCATACGGTACGGACGAGCATAAGTTACTCTTAGCTACGTATATAGGTGGGTAGCTAGCAGAGAATAATTATTCTGCACCAGATTCGTTGATA
TCAACTTGAGCCTTGATAGAGAGCTGGATCGATGTATCGATCAGCTCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAG
AGCACGATGTCGGTGCCGTCGCGGACGCCGCCGTGGTACTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTGACCATGCGGATGCAGCGGA
AGCCATGGCCGACGTCCTTGCTCTCGGTCCACAGCACCGACTCGTCCTGGTACTCTGGGTTGTACGG