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Detailed information on CNT30577063


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005574, E-value = 1e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554464Oryza barthiiOryza glaberrima10032.5899.16953reverse complement

Expression of CNT30577063

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MPLVLSLSLKSSQAKTFTFITHFVFHSHTKGLGGFKAKKLSL*

>peptide 2 (90 aa)
LKGGGHIFKYKSIPLLPYVPSNYEKDFQEALPTQRTKSPPCKSDHLKELQIQIPNNAQVLPAPSTEGTCNRVSLCPPSHKTHVRSSSSFA*

>peptide 3 (31 aa)
MSSVQHASCIKPIPKKQPSKDLYFHNTLRFP*

Sequence

>CNT30577063
CTGAAAGGAGGGGGCCACATTTTCAAATACAAGTCCATTCCTCTGCTTCCATATGTGCCAAGCAACTATGAAAAAGATTTCCAGGAAGCCCTTCCCACCC
AGAGAACCAAATCTCCACCTTGCAAAAGTGACCATTTGAAAGAACTCCAAATTCAGATTCCAAATAATGCCCAAGTATTGCCAGCACCTAGCACTGAAGG
GACATGCAACCGAGTTTCCCTATGTCCTCCATCACATAAGACACATGTGAGATCATCATCTTCCTTTGCGTAATGTCTTCGGTTCAGCATGCCTCTTGTA
TTAAGCCTATCCCTAAAAAGCAGCCAAGCAAAGACCTTTACTTTCATAACACACTTCGTTTTCCATAGCCATACAAAAGGTCTTGGAGGATTCAAAGCCA
AGAAATTAAGCTTGTAAAAGTGCTTTGCAGTGTAGACATCTGAAATCCAAATAAAACTCCAGCTATACCCCTGCACCTCATTCAAGTTCAGAGAATTGAG
CTGCTCCTCCAGCTGCAAAAACTCCACATAGGCCTATGTAGACAGAGGCAGAAGAAAAGAGTCCTCCAAAGACCTTGAACACATATTACTTACTGATTCC
TCCTTCTGCAAAGCTAGATGACATAAATTTGGATATTTATCACTTAGGAGTTCATCATTCCATAGATATTCCCAGAAGAGGGCTGAATTACCAGACTGAA
TGGTGCACTAAGCAATTGTCACGCCCGGAAATTCACTAGTAATTTCCGAACTAATTTGTGCATAAAATCCTCGTCCAGGAATCAGCCGAGGTACACAAAC
TGACAATTTAATATACAAATCCATCNTAATAATAACGTTACATACTTAGAAAAGAAAAGAAAAACAACAGCAGCGGAATTAACGGTCTAGCGATGGCTTC
AGCTCCACTCCCACAAGCAACTCAACTAGGGTATAAGCCAAACGTCTTCTCCT