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Detailed information on CNT30577034


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554461Oryza barthiiOryza glaberrima10052.94100450forward
CNT30102489Oryza barthiiOryza rufipogon74.4491.5395.22335forward

Expression of CNT30577034

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RRSGRAAAGEIAAPAASRSAGAARCRELQPASIP*

>peptide 2 (31 aa)
MAVSSLMNEYPGSFNIAEQLLTLSIASMASA*

Sequence

>CNT30577034
GCGCCGGAGCGGGCGAGCGGCGGCGGGCGAAATAGCCGCTCCGGCGGCGAGCAGATCAGCAGGAGCAGCACGGTGTAGAGAGCTCCAACCCGCCTCCATT
CCTTAATACCAGGTTGAATGAGCAGGCTCACCTTTCGCAAGGAATGAGATAGTTCTGTCAAGTCTGAGCTGCTGAGCTTGGATTGAGCATGCAAGCATAG
ATTTTGCAGAAGACTTGCGGCCACGTATTTGTATCTGTCATCTCGGATCATGGCAGTGAGCTCTCTAATGAATGAATATCCTGGTTCCTTCAACATTGCT
GAGCAATTATTGACACTTTCCATTGCCAGCATGGCTAGTGCTTGACCAGCCGTAATTTGTAGGGACCGATCAGAATATGTGTTTGATGGTGGATGTTGGG
CAAGAAATGCTTGGATCAACCTGCTAATGATCACTCGGATTGAACCTATC