Detailed information on CNT30577004


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MA63|Y3550_ARATH, E-value = 1e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30386340Oryza barthiiTriticum turgidum33.7821.0586.07201forward
CNT30658060Oryza barthiiTriticum dicoccoides33.7826.9886.07201forward
CNT30132065Oryza barthiiLolium perenne35.1326.8686.6209forward
CNT30680595Oryza barthiiTriticum urartu33.7821.2585.57201forward
CNT30362690Oryza barthiiSorghum bicolor20.1710.6588.33120forward
CNT30596560Oryza barthiiOryza meridionalis100.1785.2694.3596forward
CNT30102674Oryza barthiiOryza rufipogon16.9743.53100101forward
CNT30556771Oryza barthiiPanicum hallii17.3120.2893.2103forward

Expression of CNT30577004

Peptides detected in this lncRNA

>peptide 1 (40 aa)
RKCRHMHTSKTPFFCCHKRPTLTYSVQDFRRRLTSHLQAR*

>peptide 2 (80 aa)
ENVVTCIHLKHHFSAAISAPLLLIQFRTSGEGLPLTFRRGDLTYWVFADSLFDGWASGDDSPKTLAMRSVGMAGRYCAPV*

>peptide 3 (57 aa)
MTRRKPWRCARWGWRGGTVLRCNPCRPRRRSPCCTSRPSRRRWARRSAPPAGTAAGC*

Sequence

>CNT30577004
CGAAAATGTCGTCACATGCATACATCTAAAACACCATTTTTCTGCTGCCATAAGCGCCCCACTCTTACTTATTCAGTTCAGGACTTCAGGCGAAGGCTTA
CCTCTCACCTTCAGGCGCGGTGACCTCACCTACTGGGTCTTCGCCGACTCGCTCTTCGACGGCTGGGCCTCCGGCGATGACTCGCCGAAAACCTTGGCGA
TGCGCTCGGTGGGGATGGCGGGGAGGTACTGTGCTCCGGTGTAACCCTTGTCGGCCGCGGCGGCGATCACCTTGTTGTACTTCTCGGCCCAGTAGGCGGC
GGTGGGCACGGCGATCTGCGCCACCTGCGGGAACAGCGGCAGGTTGTTGAGCGAGCGCCAGGTGGAGACGGCGAGGTCCTTGGCCGCCGGCTGGATCCTG
CCGTACACGCCCTTGGCCACGGGCTCGACCTTGGCGTACGCGACGCGCGCGGCGCCGGTGACGCCCGACTGCTGCACCTCCGCGGTGAGCTCCCTCGCCA
CGTCCGGCACGCCGCGGGCCACCGCGCAAGCCTTGGCGGAGGCGGCCTTCAGCGTCGGCGGGAGGTGTCGGTCCAGCTCTTGCACCGTGTCATCC