Detailed information on CNT30576965


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554324Oryza barthiiOryza glaberrima91.76100100880forward
CNT30110701Oryza barthiiOryza longistaminata19.0828.7392.9183forward
CNT30102645Oryza barthiiOryza rufipogon8310099.37796forward

Expression of CNT30576965

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MNGVNMASLLSHNLYLCDTSQLFITKHHETLG*

>peptide 2 (90 aa)
NPENCLLVLAHHKSRTHVSSVHGNRTPRPDLYARHLAAARDFAASSSPNRCLIPHRRLAVLSSTTWQLRLVLTLATITGSSSPEVPTLGA*

>peptide 3 (70 aa)
EILKTAYSYWPTTSPEPTSPQSTVTELPVQICTLAISPPQGISPPHLHRIAASFRTAGLQSSAPRPGNSV*

>peptide 4 (60 aa)
MAPVTGISPSRLGRPRQPNPFFPSRHWLHGSTVTSTVAQCMQPVMFKHTSSLWHLVCRTT*

>peptide 5 (36 aa)
MDNRWLPSPASLPRDSVALASPTPSSRRGIGFTAPQ*

Sequence

>CNT30576965
GAAATCCTGAAAACTGCCTACTCGTACTGGCCCACCACAAGTCCAGAACCCACGTCTCCTCAGTCCACGGTAACAGAACTCCCCGTCCAGATCTGTACGC
TCGCCATCTCGCCGCCGCAAGGGATTTCGCCGCCTCATCTTCACCGAATCGCTGCCTCATTCCGCACCGCCGGCTTGCAGTCCTCAGCTCCACGACCTGG
CAACTCCGTTTAGTCCTCACTTTGGCCACCATTACCGGCTCATCCTCGCCCGAGGTGCCGACGCTAGGTGCCTAGCAGCCTAGGTCGTTCCCCCTAGGCC
GCCGGCAGCTCGCCTCGCCTATGGACAACAGATGGCTCCCGTCACCGGCATCTCTCCCTCGCGACTCGGTCGCCCTCGCCAGCCCAACCCCTTCTTCCCG
TCGCGGCATTGGCTTCACGGCTCCACAGTGACAAGTACAGTAGCACAATGCATGCAACCTGTGATGTTTAAGCACACATCTAGTTTATGGCATCTTGTCT
GCAGAACAACCTAGCGAACTGGAATTCAGAGAAATCAAACTTATATTTTTTTCATCTCTAAGATACATTATCATCGGGGAAGACAATGTTCAGGTTATAT
ATTTTGCAAGGTAATGCAAATCGATTGCATGGGAAAGCTACATCATGGTGTGAAGACGGGAGGAGCTAAAGCAAGTATTAGCTTATAAGAACATTTATAA
ATTTGTTTTGAGAGAAGATGTAAATCTCATTTCCTGTATGTTTGTTTACATGACTTGTTGAGCACAGTTGCTCTTAATATAATTACCTTTCGTCGATTGG
AGTGTGTTACGACTTTGTTTGTGGCATTATGTTGACGGCTTGGATATGAATGGTGTGAATATGGCAAGCCTGTTATCCCACAATTTATACTTATGTGACA
CGTCTCAATTATTTATAACGAAGCATCATGAGACGCTTGGATAGTTGTAGAGACGTTAT