Detailed information on CNT30576960


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003659, E-value = 1e-136

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692309Oryza barthiiOryza sativa19.146.4298.92461reverse complement
CNT30553434Oryza barthiiOryza glaberrima11.6822.0391.84282forward
CNT30107954Oryza barthiiOryza longistaminata64.2593.7796.781551forward
CNT30102385Oryza barthiiOryza rufipogon57.79101.2397.851395reverse complement
CNT30604708Oryza barthiiOryza punctata64.7968.9697.121564reverse complement

Expression of CNT30576960

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MMVDPTIHPVALFPRSASSGCIYLRMMILRXKYSCNSSQQW*

>peptide 2 (47 aa)
SPIHAAAAASPACPPSMAGGGEVGPSLRGQQGGPEVVRPRRSPLPHR*

>peptide 3 (56 aa)
MPLVDFQXKKCTGWRQLKILPSGVVKYLRNTCYEHLATLESDIFASLIQHILVGDC*

>peptide 4 (41 aa)
IPDPRRSSRITGLPSIDGWRRRGRAFSSGAAGRSGGSASAS*

>peptide 5 (40 aa)
MNESECIMHCACSCSISXQRDQLASGNQTRYLFHYLNILP*

>peptide 6 (39 aa)
MFGLIWAFAMDLAYLLFDIKANGYNKIGLKICYIIDGXG*

>peptide 7 (36 aa)
HPRSTPQQPHHRPALHRWLEEARSGLLFGGSREVRR*

>peptide 8 (35 aa)
MLHHRWXRLKSSWACHWAKPINRVLNTWILMGHLIF

>peptide 9 (34 aa)
MRVSASCTVHVHAQFXGKEINLHLAIKLDIYSII*

>peptide 10 (33 aa)
MGCNLCAIWVVIVFDCWAYMGLAHLLFDTNMMG*

Sequence

>CNT30576960
CATCCCCGATCCACGCCGCAGCAGCCGCATCACCGGCCTGCCCTCCATCGATGGCTGGAGGAGGCGAGGTCGGGCCTTCTCTTCGGGGGCAGCAGGGAGG
TCCGGAGGTAGTGCGTCCGCGTCGTAGTCCCCTGCCGCATCGGTGACTCAGCAGCGGCGTCGCGGCGAGCCGCTGGGCAGGAGGGTGCTCAAGTGGCTTC
CTGTGGAGCGCCTTGTCACGACCCAAATCCGGCAGCGAAGCTCACTGGAGTTGAGGGACCGATCGATTGCGTGGAAGAGGGGAAGAACAGAGGGGAAGCG
GAGGAGGAAGACGAGACAGAGTTGGTAGGAGGGATTGTTTTTCTATTTTTCAACATAGTTGTTTTGGGACAGCTCATTGAGGTTATATTCCCCTCCCGAT
CTGACCACGCAGGGCCCACACACCATGNGACACACACACCAACTCCTTTATTACATAAATACGCTTTCTCCCACATAATTACGCTTTCCTCCATTGCTTA
ACGCCTTTGAGCTTTACGCCTTCTCCTGTTCCCCGTCCATTGTCGCAGCTTCAGAGTCCGTCAGAGAGGCGGTCGTGACACGCCGATGGGTCGAGCACTC
ATCCGCCATCATCGAGCCACAACAGTAAGCTTTAATCTCTATCTGTCTCTGTTGAATGATGGTTGATCCTACGATTCATCCGGTAGCACTGTTCCCTCGA
TCTGCAAGTTCTGGATGCATTTACTTGCGTATGATGATACTTAGATCNAAGTACAGTTGCAACTCCTCTCAGCAATGGTAATTCTTGGCATGTGTACTTA
ANTCTTATTCCCCTGTCCTACAGAAAGTAAATCAATTTATGTAGCAGAGCTTTCTTGCCACGCTACATAGGTAGAGACTAAATATTCTGAACTTGTTTCA
TTGCATATTCATNTGGAGCTGTAAGTTTCTGATGAAAAGAGAAGGATGCAAGCTTGCAGTTGCTCTGTTGNAGATATGAATTGCAAGCTACAGAGGGTTG
TGTGCCACTGCGTTCAAAGATCCCATTGACTAGAAAGATAAGTGTCATTTTCCCACCTTCTTCTTACTACCTTTTCCTATTCTTGAACACAAACATTTGC
TACCTCAAAATGATTTTTTATTCATGTGATCCCTAAGAATATTGGCATGCAGTCTGCATACATTAGATGCTTACACCAATACTTTAATTAGTAGTTATTA
AGAACCGCCTGTAAACAAATTACATTCATGTAGGTGATGACTGATGAATGAGAGTGAGTGCATCATGCACTGTGCATGTTCATGCTCAATTTCTNGGCAA
AGAGATCAACTTGCATCTGGCAATCAAACTAGATATCTATTCCATTATCTAAACATCTTGCCATGAGCTAATCTGCTAAAACAGAGAAGTAATCTGCTAC
TTCTACTGTATCTTCTTTCACACTGTAATTCATTTAGTTCAGTTCAGTGCGCTTTACAGAAGCAAGCAATTTAGCATTCAGCATTTCTGCTTCAATTAGC
TGGTGAAGAATCTGATCCTGATCAGAGGCTACCCTTTAGACTTTAGCTTGCTGGTTTGATTCCAATCCTTGGTTGGATGAGTGGTCCAAATTTACCCAGT
TNCACCAGTAGTTTTAACTTAGCCTGAAATTAATTAACTTAAGAGTTTCTTTCCTGTAGTGATAAAGCTGCATCCAGTACTGCATTTCTCTGTACTTCTC
TCTCTACTGTATACTATGTCAGCTTGTTGAGAACTAGATTAGATTTCTCTCTACTGTATACTGCATTTCAGTACTGCATTTCTCTGTACTTACAATGATG
TCTGTTGGGTAGGATCTTGTAAAGGGTAAAGATACATTGATGCCATTGGTTGATTTTCAAGANAAGAAATGTACAGGATGGAGGCAGCTGAAGATTTTGC
CATCTGGAGTGGTGAAATATCTCAGAAATACATGCTATGAACATTTGGCAACCTTAGAATCAGATATCTTTGCTAGTTTGATACAACATATCCTTGTAGG
TGATTGTTGATGGTGCATGCAGTTTGTTGAAACCTTTGTTTTTTTCGGTTTGTAAGACTTCTGTAATGGTGCATTATCAGAAGAACCAGTTGCTATATGG
GTTGTAACCTTTGTGCTATATGGGTTGTTATTGTGTTTGATTGTTGGGCCTATATGGGCTTAGCCCACTTGTTATTTGATACTAATATGATGGGCTGAAA
ATGGTGTGGTATAATGTTTGGGCTTATATGGGCTTTTGCAATGGACTTGGCCTATTTATTATTTGATATTAAAGCAAATGGATATAATAAAATTGGGCTG
AAAATATGCTACATCATAGATGGGCNAGGCTAAAATCTAGTTGGGCATGCCATTGGGCTAAGCCCATAAACAGGGTGCTCAATACATGGATTTTAATGGG
CCATCTGATATTTT