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Detailed information on CNT30576943


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694621Oryza barthiiOryza sativa96.9191.2799.68627forward
CNT30554333Oryza barthiiOryza glaberrima96.9197.82100627forward
CNT30102477Oryza barthiiOryza rufipogon96.9198.5899.68627forward
CNT30117124Oryza barthiiOryza nivara96.9196.4699.2627forward

Expression of CNT30576943

Peptides detected in this lncRNA

>peptide 1 (75 aa)
STLSMNAADSSLLAAPPTPPSRGQYRACLWIMCILSAQDVCTRISRLELAISGDPEAKIIDCPFDCICGELKISS*

>peptide 2 (28 aa)
MCNACIIFFCILIYSTILLPLSYKKNHQN

>peptide 3 (40 aa)
MITSPDNGEPFQNFLVELSSLMKFKEIYRAERSAFRPNWE*

Sequence

>CNT30576943
CTCAACCTTATCCATGAACGCGGCCGATAGCTCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGGCATGCCTTTGGATCATGTGT
ATTTTATCTGCTCAAGATGTGTGTACAAGAATAAGTAGGCTGGAGTTGGCAATAAGTGGTGACCCGGAGGCTAAGATTATTGATTGCCCATTTGATTGCA
TCTGTGGAGAACTGAAGATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAAGATTGAATTTGTGTTTTTGAGAA
GCCTACTTAGGTCAGCCACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTACGAGTCCTGACAATGGGGAGCCATTCCAGAACTTCCTGGT
TGAACTATCCAGCCTGATGAAATTCAAGGAAATTTACCGCGCTGAGAGATCCGCATTCAGACCAAACTGGGAGTAAGCGTGATCATTCAGAAACAGCGTG
CTACAGATCAACACCAAAATTCCTAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTATATTTTTCTGCATTCTAATATAT
TCGACAATACTCTTGCCGCTTTCATATAAAAAAAACCACCAAAATTC