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Detailed information on CNT30576937


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554275Oryza barthiiOryza glaberrima55.8476.1193.92411forward
CNT30107343Oryza barthiiOryza longistaminata34.3868.0198.42253reverse complement
CNT30102393Oryza barthiiOryza rufipogon56.7956.5697.37418forward

Expression of CNT30576937

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MLIAHMLNSFWLIFCCVCFRTIDSCWFMFRCFNLLILGLRYVALDGGMTPLN*

>peptide 2 (37 aa)
WARSAPPPTAAAAAAMRRGSFGGRRQGDEQASSSASV*

>peptide 3 (47 aa)
GLVALRPQRRRRRRRCEGAASVAAGRATSRRAALRRCREVDPRGGRH*

Sequence

>CNT30576937
GTGGGCTCGTAGCGCTCCGCCCCCAACGGCGGCGGCGGCGGCGGCGATGCGAAGGGGCAGCTTCGGTGGCCGCCGGCAGGGCGACGAGCAGGCGAGCAGC
TCTGCGTCGGTGTAGAGAAGTCGACCCCCGGGGCGGCAGGCACTGACGGCCCATCAGTTCTTTTGCTCTGTCCACAAGAGCAAAGAGAGGTGTGCTGTAT
TCCATAAAACCTGCGTCACCCAAGAAAGTCCTGTAGTTCTCAACCCCTGAGGGCATCTCCTCTACCATCCACAGTGCTTCTATCATCCGGAATTCGTTGA
AACAACTGAAGTTGGTTGAAAACCAAGAAAGAATGTTTTGGGGGTATAACTTCTAAGGCGGGTGGCCGAGGAGATGTACAGTTCACAATTTGGATGGAGA
GGCAGTAGCAGAAGACTGGGCTGGAGAAACTAGGCAGTGGCGCCGTCTGATAAAATGTTGAAGGGGAAGGAAGCTTCGGCTTTGTGTTCTTAGGATGCTC
ATAGCTCATATGTTGAACTCATTCTGGCTTATCTTTTGTTGTGTTTGCTTCAGAACTATTGATAGCTGCTGGTTTATGTTTAGATGTTTTAATTTGTTAA
TTTTGGGACTTCGTTATGTTGCCTTAGATGGTGGGATGACACCATTGAATTAGGCCTGATATATTGTATTGTCCCAGTTCCTGTAATCTATTTTTGGAAC
CGTTTGTCCGTTTTTATTATAATAGAAATCCCCAAT