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Detailed information on CNT30576932


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41359|PR1_SAMNI, E-value = 3e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694903Oryza barthiiOryza sativa44.7438.991.42268forward
CNT30554258Oryza barthiiOryza glaberrima33.5637.08100201forward
CNT30596584Oryza barthiiOryza meridionalis24.2125.2681.38145forward
CNT30102461Oryza barthiiOryza rufipogon54.9245.4493.62329forward

Expression of CNT30576932

Peptides detected in this lncRNA

>peptide 1 (32 aa)
IYFLLLFERQRTYIYNKIPVIIISHIYIILHT*

>peptide 2 (30 aa)
MAATTTAAAMAAATAPDIFGVSICKHYYTS*

Sequence

>CNT30576932
CATTTATTTTCTTCTTTTATTCGAACGACAACGTACATATATATATAATAAGATCCCCGTAATTATTATTTCGCACATTTATATCATACTCCATACATAA
TATTATCACGTAACATAGTTAAAGTAAATACTGTATTAATAACTTATTAAGCAGAGAGAGTGAGGCCACGCTCGAAGGGGCGCTCTCCCTGGAAGTTGCC
GGCGGGGTTGTAGTTGCAGGTGATGAAGACGCCGCCGCCGTCGCACTCCACGCGGGCGCAGCCGATCGCCGTCGTGCGGCTCCACATCACCTGCGTGTAG
TGGAGGCACGAGTCCCACGACCCCAGCTGCCGGAGTGGATGAGGGCGCAGTCGCCGGCGCGCTCCGCCGCGTAGTTCTCCGCGTACGCCGCCACGGCGTC
GTCCCAGACCACCTCGCCGACGCCCTCCACGCCGCGCGCCGCGTTGTGGAGGTCCACGAAGTCCTGCGGCGAGTTCTGCGCCGCCGCCGGCGTGGTCGCC
ATGGCCGCCACAACCACGGCGGCGGCGATGGCTGCCGCTACTGCTCCTGATATCTTTGGTGTCTCCATATGCAAACACTACTACACTAGCTAGTAGCTG