Detailed information on CNT30576908


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI00|6PGD1_ORYSJ, E-value = 3e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521764Oryza barthiiSetaria italica77.4967.5389.72389forward
CNT3098756Oryza barthiiSolanum tuberosum23.1120.9481.03116forward
CNT30399008Oryza barthiiTriticum turgidum38.8435.5890.77195forward
CNT30611921Oryza barthiiArabis alpina36.0610.980.66181forward
CNT30476053Oryza barthiiSaccharum spontaneum77.4924.0187.92389forward
CNT30368254Oryza barthiiSorghum bicolor40.0476.4389.55201forward
CNT30110914Oryza barthiiOryza longistaminata76.6944.4199.22385forward
CNT30581829Oryza barthiiEchinochloa crusgalli28.884.9583.45145forward

Expression of CNT30576908

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRSRKMARMMHPPFQILASSPRLRLHPFSMLLALMMFMP*

>peptide 2 (35 aa)
ARSSTTRCGRSRACRPSRRCEPRNSPSVPAPGWPS*

>peptide 3 (53 aa)
RDLQPLGVEGAGHVDPLVGVSPEIVPLCLHQVGLLDAVQEDGTDDAPSLPDPR*

Sequence

>CNT30576908
CGCGCGATCTTCAACCACTCGGTGTGGAAGGAGCCGGGCATGTCGACCCTCTCGTAGGTGTGAGCCCCGAAATAGTCCCTCTGTGCCTGCACCAGGTTGG
CCTTCTTGATGCGGTCCAGGAAGATGGCACGGATGATGCACCCTCCCTTCCAGATCCTCGCTAGCTCACCGAGGTTGAGGCTCCACCCTTTCTCCATGCT
CTTGGCCTTGATGATGTTCATGCCCTGAGCGTAGCTGCAGATCTTCGAGGCGTAAAGAGCCTGCCTCACGTCTTCAATCAGCTGTGCCTTGTCCACTGGC
AAGTTGCTGGAGAAGTCACCTTGGAAGACCTTGGCAGCCTCAACACGCTCATCCTTCAACCCACTGAGGAACCTGGAATCCAAGGATGCCTCAATTGTAG
GAGCAGCCACAGAAAGCTCTGCGGCCTGCTGCACAGTCCACTTCCCAGTTCCCTTCATCCCAGTCTTGTCCAGGACCTTGTCGACCAGGTGGCCTGAACC
CT