Detailed information on CNT30576894


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000903, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694192Oryza barthiiOryza sativa99.7641.8596.2816forward
CNT30596243Oryza barthiiOryza meridionalis62.7192.4391.62513reverse complement
CNT30371012Oryza barthiiOryza glumipatula96.9426.0491.8793forward
CNT30107829Oryza barthiiOryza longistaminata96.8244.3495.71792forward
CNT30103630Oryza barthiiOryza rufipogon47.6880.2594.1390reverse complement
CNT30115482Oryza barthiiOryza nivara74.82101.6694.44612reverse complement
CNT30604527Oryza barthiiOryza punctata27.0270.1688.24221forward

Expression of CNT30576894

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMDLYIKLSVCVPRLISGRGFYAQISSEITSEFS

>peptide 2 (90 aa)
MLLLQMSLYYAILWYPCALAYLLCGLLSMSYAHSCNNQSTSVEEKGSRRRRRLAYTPVELPVGVELKPSLDRYSAAVVFLFFCKYVTLLL*

>peptide 3 (35 aa)
MLILAIINQPQLKKKDPEGEDVWLIPQLSCLWEWS*

>peptide 4 (51 aa)
MVHCGELCCAEGIVTASIRVLSSIATHGRHDVEAVSCGYSGIPLARVKLFE*

>peptide 5 (51 aa)
MIKVLYCFITLKCLLNAAFANEPVLCHPLVSLCTCIFAVWLVEYVICSFLQ*

>peptide 6 (61 aa)
GVHALFYKGVIMIQEWCTVVSCVVQRVLSQPLFGYFPVSRRMVDMMLRLCLVGTVVYLWPE*

>peptide 7 (43 aa)
MFFVISLTPLTIIIDVITGNNLLSSWFGVRSVQPGMVVQNGWA*

Sequence

>CNT30576894
GGGGAGTCCATGCCTTGTTTTATAAGGGGGTGATTATGATCCAGGAATGGTGCACTGTGGTGAGTTGTGTTGTGCAGAGGGTATTGTCACAGCCTCTATT
CGGGTACTTTCCAGTATCGCGACGCATGGTAGACATGATGTTGAGGCTGTGTCTTGTGGGTACAGTGGTATACCTCTGGCCAGAGTAAAACTATTCGAAT
AGCCGTGCCCGCGGTTATGGGCGAGTTGAGCAATGTTTTTCGTGATTAGTCTCACACCTCTCACAATAATTATTGATGTTATAACTGGTAATAATTTGCT
TAGCTCCTGGTTTGGAGTTAGATCTGTACAGCCGGGTATGGTTGTTCAGAATGGTTGGGCCTGAGCAGCATGGGCGTGTTGTTCAGTGTTGATTAAAATT
AATGATTAAAGTACTCTACTGTTTTATTACTCTTAAATGTTTGCTAAATGCTGCTTTTGCAAATGAGCCTGTATTATGCCATCCTTTGGTATCCTTGTGC
ACTTGCATATTTGCTGTGTGGCTTGTTGAGTATGTCATATGCTCATTCTTGCAATAATCAATCAACCTCAGTTGAAGAAAAAGGATCCAGAAGGAGAAGA
CGTTTGGCTTATACCCCAGTTGAGTTGCCTGTGGGAGTGGAGCTGAAGCCATCGCTAGACCGTTATTCCGCTGCTGTTGTTTTTCTTTTCTTTTGTAAGT
ATGTAACGTTATTATTATGATGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTTCTGGACGAGGATTTTATGCACAAATTAGTTCGGAA
ATTACTAGTGAATTTTCG