Detailed information on CNT30576846


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673990Oryza barthiiSetaria viridis28.7727.3491.43105forward
CNT30183892Oryza barthiiSecale cereale24.6617.0191.1190forward
CNT30306537Oryza barthiiTriticum aestivum24.6625.592.2290forward
CNT30226503Oryza barthiiHordeum vulgare24.6616.0492.2290forward
CNT30400060Oryza barthiiTriticum turgidum24.6617.0892.2290forward
CNT30442646Oryza barthiiAegilops tauschii24.667.6492.2290forward
CNT30670281Oryza barthiiTriticum dicoccoides22.4710.1292.6882forward
CNT309612Oryza barthiiZea mays26.310.289.5896forward
CNT30364335Oryza barthiiSorghum bicolor40.2716.8687.76147forward
CNT30370487Oryza barthiiOryza glumipatula10038.1897.81365forward
CNT30110238Oryza barthiiOryza longistaminata50.962796.24186reverse complement
CNT30580134Oryza barthiiEchinochloa crusgalli39.4534.6290.97144forward
CNT30551312Oryza barthiiOryza brachyantha44.6615.4491.41163forward

Expression of CNT30576846

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MVLGMMMSPMLLCHGSERWLARFSSGPVPGYADCWTQKPTKASMANRPANR

>peptide 2 (34 aa)
MDGFTREHPLLKLYITRPTSSCLPADRCVRTRAQ*

>peptide 3 (69 aa)
SLTKTSLISCLIQKLRWTDSQESTLYLSFTLQGQPAAACRPTAACARARNNQPITHSTHARTGSCQAQG*

Sequence

>CNT30576846
GAGTTTAACTAAGACCAGTTTGATTTCGTGTTTGATACAAAAATTAAGATGGACGGATTCACAAGAGAGCACCCTCTACTTAAGCTTTACATTACAAGGC
CAACCAGCAGCTGCCTGCCGGCCGACCGCTGCGTGCGCACGCGCGCGCAATAATCAACCAATCACACACAGTACGCACGCACGCACCGGTTCGTGCCAAG
CTCAAGGGTAGATGGTTCTCGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCCGAGAGGTGGCTGGCCAGGTTCTCCAGTGGGCCGGTGCCCGG
GTACGCCGACTGTTGGACGCAGAAACCCACAAAAGCCAGCATGGCCAATCGCCCTGCAAACCGAT