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Detailed information on CNT30576813


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30527503Oryza barthiiEucalyptus grandis13.0346.8390.6296reverse complement
CNT30549212Oryza barthiiIpomoea triloba26.736.5395.94197forward
CNT30270599Oryza barthiiChenopodium quinoa26.7312.194.92197forward
CNT30730494Oryza barthiiCorchorus capsularis26.7322.3996.45197forward
CNT30391333Oryza barthiiTriticum turgidum26.7332.8398.98197reverse complement
CNT30508923Oryza barthiiSolanum lycopersicum13.4329.6485.8699forward
CNT30553971Oryza barthiiOryza glaberrima87.1198.77100642reverse complement
CNT30442196Oryza barthiiAegilops tauschii26.7323.2398.98197reverse complement
CNT30656195Oryza barthiiTriticum dicoccoides15.3343.9798.23113reverse complement
CNT30205642Oryza barthiiHelianthus annuus26.7319.0396.45197forward
CNT30718256Oryza barthiiMalus domestica golden9.522.8885.7170forward
CNT30627908Oryza barthiiDaucus carota13.4332.5785.8699reverse complement
CNT30688674Oryza barthiiTriticum urartu26.7314.9698.98197forward
CNT30620564Oryza barthiiCajanus cajan20.622.9498.03152reverse complement
CNT30354697Oryza barthiiLactuca sativa19.9520.8297.96147forward
CNT30410483Oryza barthiiPapaver somniferum26.739.6396.45197forward
CNT30642274Oryza barthiiCannabis sativa26.0523.592.71192reverse complement
CNT30118993Oryza barthiiCitrus clementina11.6724.4383.7286forward
CNT30150154Oryza barthiiBrachypodium distachyon26.7317.2297.97197forward
CNT30104374Oryza barthiiOryza rufipogon26.7314.8396.95197reverse complement
CNT30581628Oryza barthiiEchinochloa crusgalli12.4826.997.8392forward
CNT30604015Oryza barthiiOryza punctata15.0622.98100111reverse complement

Expression of CNT30576813

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MRETEACKGFLRPDGHWSSSAKAEGSLTVRLTRRAETKVGLSDPTVPSGRAVAQRIKVTLGITG*

>peptide 2 (47 aa)
DGVAGAGIVARDNTGNFVTAECRRYDHISDPSTVEMLACRDAVMLAL*

>peptide 3 (44 aa)
MNLVDPFRRPSMTIDRTYPIFTVRVGEGQSLVLKTSTVFFYTVC*

>peptide 4 (44 aa)
MELRVQELLHGIIQETLSLLSVEDMTISVIRAQWRCWRVEMQSC*

Sequence

>CNT30576813
GATGGAGTTGCGGGTGCAGGAATTGTTGCACGGGATAATACAGGAAACTTTGTCACTGCTGAGTGTCGAAGATATGACCATATCAGTGATCCGAGCACAG
TGGAGATGCTGGCGTGTAGAGATGCAGTCATGTTAGCACTGTAAATTTGGGAGAGACTGCATCCCTTTCCTTCGGCAGCTCTTTAGGTTTCCCAAGGATA
GCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCGGAGCGAATGAGAGAAACGGAGGCGTGCAAAGGTTTCCTCAGGCCAGACGGACATTGGTCCTCGAGTG
CAAAGGCAGAAGGGAGCTTGACTGTAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCA
ACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAAACGACAAGGAATTCCGTTAATAACTGACCGTTTTGATTCTTTAGAACAACTCGATG
AATTTAGTAGATCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTTACAGTGCGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAA
CCAGCACAGTCTTTTTCTATACTGTATGCTAGGACAGACCTGTAGGTGAGCACAAGCACAAAAACCAGCACAGTCTTTTTCTATACTGTATGCTAGGACA
GACCTGTAGGTGAGCACAAGCACAGCCGGCCTTCCAC