« Back to Oryza barthii search


Detailed information on CNT30576806


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005507, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554221Oryza barthiiOryza glaberrima10089.1799.85667forward
CNT30102325Oryza barthiiOryza rufipogon10094.0899.55667forward

Expression of CNT30576806

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLESWACVPSKRQMRHSWWIPAKNLYLNLQVVGEVVLAL*

>peptide 2 (44 aa)
VLFLSLTLHPAPLLPRQCRRSPLRLLPRPTPATLLAAAPQPSPA*

>peptide 3 (34 aa)
FSSSPSRSTQRRCFPGSAVALPCACCHAPLRRPF*

>peptide 4 (55 aa)
SLPLPHAPPSAAASQAVPSLSPAPAATPHSGDPSSRRPATVAGLNRFLGSSLLCP*

Sequence

>CNT30576806
GTTCTCTTCCTCTCCCTCACGCTCCACCCAGCGCCGCTGCTTCCCAGGCAGTGCCGTCGCTCTCCCCTGCGCCTGCTGCCACGCCCCACTCCGGCGACCC
TTCTAGCCGCCGCCCCGCAACCGTCGCCGGCCTGAATCGGTTTCTTGGCTCCTCGCTTCTCTGCCCCTAAGCTAATCCCAGCCACCGGTCTCTTGCTGCT
GCAGCCGCCGTGGAGATGGCCGGTGGAAACACAGCGCACGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGGAAGAATGCATGCTTGAATCCTGGGCG
TGCGTCCCGTCGAAGCGACAGATGAGGCACTCTTGGTGGATACCTGCGAAGAACCTTTACCTGAATTTGCAAGTCGTGGGGGAGGTGGTTTTGGCGCTGT
AAAAACTCCGGATGCAACTGGTCGCTTGCTCGTTGGTGGAGGCGCCCAGAAAGAGATAGGCTCGGGTAGCCTCTAAGATGGCTTTGCCCGCGGCGTGTGT
GTGCTCGCCTTGTTCTTAACCTGTTGATCACCCCCTGCAATTACTTCTCTGCAAGCATAGCAAACTGAAACAACTGGTTGACAGTTTTAAATTCCTTATT
ATCAACTATGTCCTGAATTTCGCACCTCAATTCCGAGTAAAAATGACAAATAGAATCTTCGGTTCCC