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Detailed information on CNT30576798


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004032, E-value = 8e-10

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691555Oryza barthiiOryza sativa22.7511.7589.87227reverse complement
CNT30552695Oryza barthiiOryza glaberrima25.6526.296.09256forward
CNT30596393Oryza barthiiOryza meridionalis43.7950.8798.63437forward
CNT30106216Oryza barthiiOryza longistaminata36.5777.6697.81365forward
CNT30100318Oryza barthiiOryza rufipogon23.0561.8396.96230forward
CNT30115625Oryza barthiiOryza nivara20.3421.4887.19203forward

Expression of CNT30576798

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MRSVKPSLDFNPVHPGVFPAPGNKSSSPEVWKKTSRGGSGGSGAPRGAKATARLSHPAATFFPSQKAIVRHLEQSLMLYFM*

>peptide 2 (42 aa)
MFAMCFLLEETDAYTVIFTVSSIFHDINNLCVRLKDIGLSSL*

>peptide 3 (37 aa)
MTSTTYVYDLKTSDCHPCKTQRHLRTRTSSLYDSTTS*

>peptide 4 (34 aa)
RREDNMWAPHVSGSTKISLSDKWVPHIFFNSNAT*

Sequence

>CNT30576798
AGAGGAGAGAGGATAATATGTGGGCTCCACATGTCAGTGGGTCCACAAAAATTTCTTTGAGTGACAAATGGGTCCCGCATATATTTTTTAATTCTAATGC
CACGTAAGCGCCACGTCAACGCTACGTGGACAGAAGACCGAGTCAATACTGTCACGTAGGCGCCATGTCAGCGAAACCGCCCTCCAAAACCACCGAGGGA
GTCAAATTACACCGGTTTTAAGAGTTGAGGGGTTGAGATATCCGGTTTTGTAGTTTAGGGTCACGGGTTAGATTTCGATCACTTTTAAGGGTCACAATGT
GAACTTATTCCGCGTGGAAAGGATACCGGCCCACAGAAAAATATGCGTTCGGTTAAGCCCAGTCTAGATTTTAACCCGGTCCATCCCGGCGTTTTCCCTG
CGCCCGGGAATAAATCATCTAGTCCCGAGGTGTGGAAAAAAACCTCGAGAGGAGGCAGCGGCGGGAGCGGCGCGCCGCGCGGCGCGAAGGCGACAGCACG
GCTCTCTCATCCGGCCGCCACCTTCTTTCCGTCACAGAAGGCTATAGTTCGTCATTTGGAGCAATCACTGATGTTGTATTTTATGTGATTAAAATGTGAT
GGTAGCAGCTTCATGAAGTACTTAAACTCTCATTTTGGGATATCCTAGGAGAAGTTTGGGTTTTGTTGTGTATTTAGACTTCGCTAGTGCAACCTGTTTT
GAGTTTGCTATGTGAGATACTTATAAAGTGAAAAGAATTGTATTATTACCTTTTGTCTGCTGACAAGACATGTTTGCAATGTGCTTCTTGCTTGAAGAAA
CAGACGCATACACTGTTATCTTCACTGTTAGCAGTATTTTTCATGACATCAACAACTTATGTGTACGACTTAAAGACATCGGACTGTCATCCTTGTAAGA
CTCAAAGACATCTTAGGACTAGGACTTCATCCTTGTACGACTCAACGACATCTTAGTGGGACTTAGGGAGGTCTGTACAACTCGACATCAGGGTGGCA