CANTATAdb - search

Detailed information on CNT30576782

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENJ5|RR16_ORYNI, E-value = 1e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690838	Oryza barthii	Oryza sativa	71.64	40.25	99.86	735	forward
CNT30277302	Oryza barthii	Chenopodium quinoa	23.88	42.98	85.71	245	forward
CNT30727992	Oryza barthii	Corchorus capsularis	22.9	36.15	90.64	235	forward
CNT30393155	Oryza barthii	Triticum turgidum	24.17	38.33	96.37	248	forward
CNT30435419	Oryza barthii	Aegilops tauschii	65.59	77	89.6	673	forward
CNT30659176	Oryza barthii	Triticum dicoccoides	32.26	100.61	95.47	331	forward
CNT30610242	Oryza barthii	Gossypium raimondii	19.49	48.54	91	200	forward
CNT30229322	Oryza barthii	Ananas comosus	5.95	25.85	96.72	61	reverse complement
CNT30655380	Oryza barthii	Rosa chinensis	21.44	26.76	90.45	220	forward
CNT30127870	Oryza barthii	Corymbia citriodora	16.76	30.88	90.12	172	forward
CNT30685543	Oryza barthii	Triticum urartu	20.96	78.47	97.21	215	forward
CNT30424174	Oryza barthii	Papaver somniferum	22.71	44.89	90.56	233	forward
CNT3058916	Oryza barthii	Amborella trichopoda	22.71	11.33	87.55	233	forward
CNT30150933	Oryza barthii	Brachypodium distachyon	16.86	65.04	94.8	173	forward

Expression of CNT30576782

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKYSSKKGNKQVCLRLIYYGISILNRGLEMINPILK*

Sequence

>CNT30576782
CCAAAAGGAACGGGTCTAGTTAAATTTCACTAAGGATAAAAGTGGCACCAATCACGATCGTAAAATTGTCATTTTTTTAGCATTTTTATTTAAATAAATA
AATAAATCTTGTATGAGAGTACAAACAAGAGGGACAACCCTACCATTTGAGCAAAGTGTAGGCAAAAAACCTAATAGGGAGTGAGGATAAAGAGACTTAT
CCATCTACAAATTCTAGATGTTCAATGGACCTTTGTCAATGGAAATACAATGGTAAGAAAAAAATTAGATAGAAAAACTCAAAAAAATAAAGGCTTATGT
TGGATTGGCACGACATAAATCCAGTCAAAAATAGGATTAAGAAAGAGGCAAATTATTTCTAAATAGTTAGACAACAAGGGATACTAGTGAGCCTCTCCTA
GTTTTTTATTCATTTAGTTCTTCAATTAACTCAAAGTTCTTTCTTTTTCTTTAAAGAATTCCGCCTTCCTTAAAATATCAGAAACTGTTCTTGTAGGTTG
AGCACCTTTTTCAAGGAAATAGAGAATAGCTGGAACATTTAAACAAGTTTGATTCTTTATCGGATCATAAAAACCTACTTTTCGAAGATCTCTTCCTTCT
CTTCGAGATCGAACATCAATTGCAACGATTCGATAGACAGCTTGTTGCTTTCTACCACATCGTTTTAAACGAAGTTTTAACATAACATTCCTCTAATTTC
ATTGCAAAGTGTTATAGGGAATTGATCCAATATGGATGGAATCATGAATAGTCATTAGTTTCGTTTTTTGTATACTAATTCAAACTTGCTTTGCTATCTA
TGGAGAAATATGAATAAAAGAAATTAAGTATTTATCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAAATATAG
TTCGAAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTCCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGA
TAAGAGAAGAATTGACTCTTCTCCAA