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Detailed information on CNT30576694


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006538, E-value = 3e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697087Oryza barthiiOryza sativa23.6597.7695.42306forward
CNT30226007Oryza barthiiHordeum vulgare13.5254.8681.71175forward
CNT30554154Oryza barthiiOryza glaberrima64.378.299.04832forward

Expression of CNT30576694

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFYSPSKILGEVHKQEFFINPARLVPSIFFMTTYSFLEILRKQSI*

>peptide 2 (84 aa)
ITHLAHLPPLLSYSRSPLHLVFPFLFLALFSPWRCGAQGLRPNCRGRRRRLCLAARRGAAAASSLFPSFFFSPYPPSFSLSSQL*

>peptide 3 (44 aa)
HNPPSPPSSSSLLFSFSSSSRFSLSLSRSLLSMALWRTRAAPQL*

>peptide 4 (30 aa)
MVFVILEQPGYFDVINNCEENAIPVLNNIA*

Sequence

>CNT30576694
CATAACCCACCTAGCCCACCTTCCTCCTCTTCTCTCTTATTCTCGTTCTCCTCTTCATCTCGTTTTTCCCTTTCTCTTTCTCGCTCTCTTCTCTCCATGG
CGCTGTGGCGCACAAGGGCTGCGCCCCAATTGTAGGGGGCGTCGCCGCCGCCTCTGCCTGGCTGCCCGGCGGGGTGCCGCCGCCGCCTCCTCTCTCTTTC
CTTCCTTCTTCTTTTCCCCTTATCCTCCCTCTTTTTCTCTCTCATCCCAACTCTAACCCTACCCGTTGCCCTGCCTCCAATTGCCATGGCTGCCGTGGAG
ATGGCCGGTGCCAAGCACCGCGCAACTCCGGCGGCCCCGACCTATCTCCATGAGTGTGCTCTCCGGTAATTTTCAGGGCAACATATTGGCTCCGATTTTG
GGCACAGCTGCAAATGTGTGAAGATGATTGAGAGCTTATGAAGGTTGCATGTCGTAGGCTTGAGACAACGGTCATGCAACTTTTTGCAAATTATGGATGG
AGATTCACAAATAGACTTAAATAAATGTGCTCTTCTTATCTTAGTTTGATCTTTTATTCTGTTGGGTGTGTTTAATTCATTTGAACTACACTCAGTGTTT
GGGTGTTACTTTTATAATAATTGGCTGTAGCTCTGATGAGCAAACGCCGGGATGTTTTATTCCATTATCTAAAAAAAAGAGGTAATTGGCTTAGGCTCAG
AGAGAAAAAAAAATGAGACCTTGCAACACATAAGCGGTAAAAGAAGCCTTTAGCTTTCATTTATGTGCCTTTTGGAACATGGTCTTTGTCATTCTTGAAC
AACCAGGATACTTTGATGTTATCAACAATTGTGAGGAAAATGCAATTCCGGTTTTAAACAATATAGCATGATGAGCTGCACGGACTGAAAATATTATGCT
ACAATAAATAGAAAACAAGTGGTGCTCAGCCAAATCTCAGTTCGTATTTCTTGGGTCTGCTACTGTAACTGGATTTGGCTGAGCTACGTGAAAATGGCCA
AATTATTTACTTAACCAACTTATTTTCTGAAATTGGATAAGCCACAAAAATAAGATTACTACAGCAGGTTACTCTGCAAAAGAAGCATGTGAGAACATAC
CCTCATAAGAAGTGATAAGCAAAGATGCCGTTTTATAGCCCTTCTAAGATCCTTGGGGAGGTTCATAAGCAAGAGTTCTTCATCAACCCCGCTCGTCTGG
TGCCATCTATATTTTTCATGACGACGTATTCGTTCCTTGAGATTCTCAGGAAGCAGTCGATATGACATCCATTGATCTGTATCACGGCTTTTCA