Detailed information on CNT30576692


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370560Oryza barthiiOryza glumipatula30.0423.9392.86140forward
CNT30110216Oryza barthiiOryza longistaminata100.2169.0893.15467forward
CNT30101987Oryza barthiiOryza rufipogon10076.5299.36466forward

Expression of CNT30576692

Peptides detected in this lncRNA

>peptide 1 (56 aa)
GRGGSGGGEAQCWGLPPHRRVQRAASRRGLTWRAASTIEDSESSRRLALSRYQLQQ*

>peptide 2 (72 aa)
GEAGQAAEKPSAGGFLHIDGCSGRRAGEASPGARHRPSRTPRVADDLLCLDTNCSSKSSSNRGCRNVPTWNN*

Sequence

>CNT30576692
GGGAGAGGCGGGTCAGGCGGCGGAGAAGCCCAGTGCTGGGGGCTTCCTCCACATAGACGGGTGCAGCGGGCGGCGAGCCGGCGAGGCCTCACCTGGCGCG
CGGCATCGACCATCGAGGACTCCGAGAGTAGCAGACGACTTGCTTTGTCTAGATACCAACTGCAGCAGTAAATCGAGCTCTAACCGTGGTTGTAGGAATG
TTCCTACTTGGAATAACTGAAGAAAAATAACAAGAAACGGTAATGCCCAAACGAATGCTACTTTCTGCAAATGTCACTAACCAAACTGGAGAAATGGGGA
AAACATAAGGTGGTATTCATGTTACACTTTGTTGTTTAGATAAGGGAATTAATAATAATGTGTCCCGGCCAAGAGATGCACAAAGAAATCTTGTTATTAC
TTTTTGGAGTTGTGGGAATAAACTCTTGTACCTAAGTGCTACAAGTTTAAATTGTTTTTCGTGAAA