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Detailed information on CNT30576670


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 6e-39

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192776Oryza barthiiSecale cereale55.7948.892.51467forward
CNT30397839Oryza barthiiTriticum turgidum55.9135.5993.16468forward
CNT30441445Oryza barthiiAegilops tauschii55.9162.990.6468forward
CNT30668444Oryza barthiiTriticum dicoccoides58.4270.2692.43489forward
CNT30475689Oryza barthiiSaccharum spontaneum56.0363.6493.18469forward
CNT30141933Oryza barthiiLolium perenne61.0570.8791.98511forward
CNT30689164Oryza barthiiTriticum urartu55.7959.5792.72467forward
CNT30721839Oryza barthiiTriticum spelta58.0671.0590.95486forward
CNT30346176Oryza barthiiEragrostis tef60.9328.0490.98510forward
CNT30364225Oryza barthiiSorghum bicolor56.0361.6391.04469forward

Expression of CNT30576670

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGXPSLSWILAFTLSIVSEDSTSSVMVLPVRVLTKICIPPLSLSTRWRVDSFWML*

>peptide 2 (44 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICIC

>peptide 3 (34 aa)
MIRDHLFIIVLPCCSTTAKRFRHHQTRLTDTHYR*

>peptide 4 (33 aa)
CQTGSNTNVYSTQSEQEHNLDKFVCQIKFLSKT*

Sequence

>CNT30576670
TGCCAAACCGGTAGCAATACAAATGTGTACAGTACACAGTCAGAACAAGAGCATAATTTAGACAAATTTGTTTGTCAGATCAAATTTTTAAGCAAAACAT
AAGAAACAGCACAAAAGGGTATAGCAGAAGCAAAATTTGGATACAATGATTAGGGATCACTTATTCATTATAGTTCTTCCATGCTGCTCTACCACAGCAA
AACGTTTCAGACACCATCAAACCAGACTTACGGATACGCATTACAGGTAAATAGTACACAATGAAACGGGACACGACTAAGGACCAGACCAGACAACCAT
AGCTCCATTGGGGAAGACAATAGGCAGACTTGTGAACCCTAGAACAGCAGCAGCTCCATGGCTGAGGACTTACTGGCCACCACGGAGGCGGAGCACCAGG
TGGAGTGTTGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATNC
CCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTG
CATACCACCCCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA
GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTC
TTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGCA