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Detailed information on CNT3057667


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225628Amborella trichopodaHordeum vulgare3.2728.8698.2858forward
CNT30655367Amborella trichopodaRosa chinensis6.8225.3191.74121forward
CNT30604314Amborella trichopodaOryza punctata3.5523.3398.4163forward

Expression of CNT3057667

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MWYSTGYTSLTFFLLSFTLLSAFFFGEGSLKGERLV*

>peptide 2 (49 aa)
MRCLPSLSMVAIVQAQIIGNSSSFSFSVTFSQQLSFHFWKVIQLAYLLE*

>peptide 3 (34 aa)
MFLSEGMTGKEEWEEKKRIRVKSVHCLMDRTEVF*

>peptide 4 (35 aa)
MVGFGTLVDKEPCHEILHMDCDKAGLLLHSLGLLN*

Sequence

>CNT3057667
GTTCGCCCATTCTATGGCTAAGGTAGGTTCCATGGTCTAGCGGCAAGTGATGAGATGTTTGCCCTCCCTATCTATGGTAGCCATAGTTCAAGCTCAGATA
ATCGGCAATAGCAGCAGCTTTAGCTTTTCAGTAACCTTTAGTCAGCAGCTTTCCTTTCATTTTTGGAAGGTAATTCAACTTGCTTACTTGTTAGAGTAAG
GTGGAATAAGCGAAAAAAAAAGGGGAAGTCATTGGCTTTGAGAGGATGACCTTTTTCTCCTTATGTGGTACTCGACCGGCTATACTTCGCTGACTTTTTT
TTTGCTGTCTTTCACTCTCTTATCAGCCTTTTTCTTTGGCGAAGGGAGCTTGAAGGGAGAAAGGCTGGTTTAGGTTCAACCACTCTCACTTATTAGAAAG
AAGGATGTAGACAATCTAAGACGGAAGACATTGTAGTTTGATTTGCTTTCTTAAGCCGATCCGCTGACCCGAGTGCTTACCTAAGCCCTTTGCATTTGTT
TCCAGCTTGATATGGACTCGGGTCCGATGTTGTCATACCACTTGTAGGCAGGACCGTCGAGGGAAAGGGAAAATTGTCTCAATAGCAAAGACCCATTTGT
GGCAGTGTTTCGGCAAGCGGTAATGAAATGAGATAAGTGTCTTTTAGGGCAACCTCTCCCATCAAACATAGAAAATGGTGGGATTTGGTACCCTGGTGGA
TAAGGAGCCATGTCATGAGATTTTGCATATGGATTGCGATAAGGCTGGATTGCTCCTGCATTCTTTGGGTTTATTAAACTGAGTTTTTCATCAAAATTTT
CCAAAGTGACAAACTGTGCGGAAGTAGATGGACCTGACTGAGCAGGTAAAGGTGTTGTTGCTTGTGCAGCTGGAACATAAGGCTGAAAAGCGGGAGGTGT
AGAAGTTGAAGGAGTTGAGGCAGCTATCAGTGCTTCCAGAGCAGCCAACTCATCTCTTTTTTATGCCAAAATTTCTTTAGATGTAGGAAAGCAGCACAAG
CAGCAAAGGTAGAGCGCGCGGCGCGCGAAAGCCGTTGCGTTGTGGCTTTCTTGCTCGGTAAGCAGCAAAGAGAGAGCGCGCTAGCGCGAAAGTCTTTGCG
GCTAACTATTCTTTTTTCGGCCGGCTGATCCGGCCGATAAAAAGTGAGCACGTTAGCATTAGCGCGAAAGCCTAAGCGGCTTTCTTGCTGGCCGCTAGCA
GTGCTTACAGCAAGAGGAGCTTGCTAAAAGGACCCAGGAAGCGGATAATCGCAATTCGTTGTTGGCCGTAGCTTGGCCAACAACAAGCATACCTTGCTGC
CAAGCTACGGTTGGACAAAAGGCTTGTGCTTAACAACAAAGATGCTCCTATTTTGCCATTCAAAGATGTTTTTTTCTTTTATCTAGTTTCCTTGCTTTAC
GCAGTGAGAATCTATCCATCTTCATAAAGGAGCCGAATGAAACCAAAGTTTCATGTTCGGTTTTGAATTAGAGACGTTAAAAAGAATGAATTAACGTCGA
CTATAACCCCGCCGCCTTCCAAGCTAACGATGCGGGTTCATTCCCGCCGTCTGCTCCCTCCATATCCCTCCATACATGATAGATCATTGATCTTTATATA
CATCTTTATGTAATAAGATTCTCGCACGGAATACAATCAACTGGATTATGTTTTTATCCGAAGGGATGACGGGAAAAGAGGAATGGGAGGAAAAGAAGAG
AATCAGAGTCAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTTTAAACCTTTGGTATAGGTTCAAAT