Detailed information on CNT30576668


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694332Oryza barthiiOryza sativa100.3297.7895.47309forward
CNT30553935Oryza barthiiOryza glaberrima10066.3899.68308forward
CNT30370511Oryza barthiiOryza glumipatula88.3133.75100272forward
CNT30108624Oryza barthiiOryza longistaminata34.7425.1293.46107forward

Expression of CNT30576668

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVMPELKDYSRLMDAWALAAIAARIINDADTSFVSR

>peptide 2 (67 aa)
RRNERAVNHSSCSWRRRSRGRWCPGIAGGGAERRAQGYEPRRPVSALPVSCCPVGAARLGVESPLQW*

>peptide 3 (44 aa)
AAATREPSTTAAAHGAAAPGAGGARGSPEAEPNAARKAMSRGGR*

>peptide 4 (38 aa)
PPQRESRQPQQLLMAPPLPGPVVPGDRRRRSRTPRARL*

Sequence

>CNT30576668
GCCGCCGCAACGAGAGAGCCGTCAACCACAGCAGCTGCTCATGGCGCCGCCGCTCCCGGGGCCGGTGGTGCCCGGGGATCGCCGGAGGCGGAGCCGAACG
CCGCGCGCAAGGCTATGAGCCGCGGCGGCCGGTGAGCGCGCTGCCCGTATCTTGCTGCCCGGTGGGGGCGGCACGGCTCGGCGTGGAGAGCCCTTTGCAA
TGGTGATGCCGGAGCTGAAGGATTATTCGAGATTGATGGATGCGTGGGCATTGGCTGCCATCGCCGCGCGCATAATAAATGATGCAGATACCAGCTTTGT
ATCTCGAG