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Detailed information on CNT30576653


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30606094Oryza barthiiGossypium raimondii6.2420.2690.9177forward

Expression of CNT30576653

Peptides detected in this lncRNA

>peptide 1 (71 aa)
VSITFLYHNRYLSMTLGLHLRWFCKTRDVLYLVLRFKTFLNSLMLVLRTSDCPSPTLTAQPESGRLMCSTY*

>peptide 2 (49 aa)
FYYLFVPQPLPFYDLGTPFEMVLQDQGCIISGTAVQNILKLANAGFKNE*

>peptide 3 (38 aa)
MKKREPNLTSFCTIKKRTRDFYPSLKRSHITPCLTLKG*

>peptide 4 (34 aa)
MVLTSVRGRGEIEVAECSLYLALIREGLIVLRKV*

Sequence

>CNT30576653
GTTTCTATTACCTTTTTGTACCACAACCGTTACCTTTCTATGACCTTGGGACTCCATTTGAGATGGTTTTGCAAGACCAGGGATGTATTATATCTGGTAC
TGCGGTTCAAAACATTCTTAAACTCGCTAATGCTGGTTTTAAGAACGAGTGATTGCCCTTCTCCGACCCTTACTGCCCAACCGGAGAGCGGACGGCTAAT
GTGTTCCACTTATTGAACAGGGTCTATGGTCGGTACCGCGCGCATTACTTGGAACAACTAGGAAAGTAAGATAAGATAAGAAAGAAAAAAAAATATTCAG
AATAGCGGAATAAGAAATGCAAAAATGAAGAAAAGGGAACCTAATCTCACCTCCTTCTGTACCATAAAGAAAAGAACCAGAGATTTTTACCCTTCTCTAA
AAAGAAGCCATATTACCCCCTGCCTTACCCTTAAGGGCTAAGAACTGAATAGGCTGACTCTAGATTCTAACTGAAAATACTCAAAATTGGACTCTGCAGG
CTTTCAAGCAGATTGATACCTACTTTACTTGCCAAAAATATTTGATGAATGCCACTAAAACTCCATCCTCTGAATAATCTTGTTGAAACCATGATCTTTC
AAACTTGAAAACCCTTTGAACAGTTCAGTCTCACACTCCAGCAACAAAGGAACATGGTCTGAACCATATCTAGGAAGGGCAGTCACCACAGCATGGGTAT
ACAACATTTAATCCCCAGTCTATTGTAAAAAGGAATCTGTCTAACTTAGCAGCTGACACAGCATTGTTCCAAGTGAATTTGCGCCCTTGCAAAGGTAGCC
TCTGGGGCCAGAAGAAGCTTTTCCCGCATTCCTGTTGATGCAGATCAGACGAGAAGGGCCATCTCTTTACTAGAATCTTCTCCCGGCGGGAAAAGACAGA
GAAGGGCGGCGAGGAATTGGTCGACTCAGTAGTATAGCCCCGATCGAGAGATGGTTTTGACCTCAGTGCGGGGTAGAGGTGAGATTGAAGTTGCCGAGTG
CTCGCTTTATTTAGCCCTAATTCGGGAAGGCTTGATAGTCCTAAGAAAGGTGTAGGATTATAAGGTCGGGGGGGGGGATATAAATGAAAATGGGTAATGT
TTTGATGTTTGATGACCAGCGAAAATAAGACCTAAAATGAACTTGTTCTTAGAAGTCTTTCAGGACAATATTAATTAGGCCAGGCCCGTTTAGTCCGTAC
AAGGCTTTTTCTCGGCCCAATTCCTAAGCCCGG