Detailed information on CNT30576609


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371171Oryza barthiiOryza glumipatula13.3142.9590.08131forward

Expression of CNT30576609

Peptides detected in this lncRNA

>peptide 1 (43 aa)
FAPPRYSTFFLLQPSLFRARAMCVRRRFLHKIRRIPCSVSKID*

>peptide 2 (42 aa)
FCSPSLQYLLPPPAEPVQSPSHVRAPPLPPQNPSHPVLCFQN*

>peptide 3 (81 aa)
LLPLATVPSSSSSRACSEPEPCACAAASSTKSVASRALFPKLIEGISCTYPPLSFPSRIGANPVVYRVESTRFRAPFSGEP*

Sequence

>CNT30576609
TTTTGCTCCCCCTCGCTACAGTACCTTCTTCCTCCTCCAGCCGAGCCTGTTCAGAGCCCGAGCCATGTGCGTGCGCCGCCGCTTCCTCCACAAAATCCGT
CGCATCCCGTGCTCTGTTTCCAAAATTGATTGAGGGGATTAGTTGCACTTATCCTCCTCTTTCTTTTCCCTCAAGAATCGGAGCAAATCCCGTTGTTTAT
CGCGTGGAATCGACGCGGTTTCGAGCTCCGTTTTCCGGCGAACCATAATCAATCCGCCGCCGATTCCTCCCGTATCCGAGTCGATCTCCTCCTCCTTTGG
CTATAAATAGCAGCCCCTCGGCCTCCTCTTCCGTTTTCTCCTTTTTCCCGAATTTTTCCCTAGCCCTAGCCGCCTCCCCACGTTCGGCTTCTCTCTCCGC
CGCCGGCCATCGCTCCAGCCGCCCCTCGCCGACGCCTCGGTCGACGCCGGCCTGTGTCGCCTCTACCCTCGGCTCCGCAAGGCCGAGCTCCACCTCGGCC
ACCCGTTCTTTTGCGCCGAACCCCGCCGGAAGTCGCCGTCACCGTGAAGGCCGAGCCATCGCCATGTTTTGATCTCCGGCGAAGCTTTGCCGCTTCTCCC
GTGGTCGCCGGACCTCACCGCAGCCTTCCTCGGCATTGCAGCGCCAAACCGAAGGCCGTCCGCTGGTTCGCTGGAACATCGTCGTGGTTGTCGATCAGTA
CCCTGTCGCCGCCTCTACCTCGTTGCCGGCCGCCGTTCTTCGCCTTTCGTCGTCACATAAGCGTGGGTTTAGTTTTTGGTTGTTTCGGAGGAGCGTTTGT
TCGTTGGAGGAGCTCTTGAAGACGAATTGAAGACGCTTGTTTGCAAGTTGAAGAAAAGGATCCAGAAGAACAAGACCTTTGGCTTAGATCCTAGTTGAGC
TGCCTGTGGGAGTGGAGCTGAAGCTTCGCTAGATTTTATTTTCCGCTGCAGTTTTCTTCGTGCTGAGGACTAAGTGCCTCTTAT